DIversité - Adaptation - DEveloppement des plantes

Corratge-Faillie, C; Ronzier, E; Sanchez, F; Prado, K; Kim, JH ; Lanciano, S; Leonhardt, N; Lacombe, B; Xiong, TC (2017) The Arabidopsis guard cell outward potassium channel GORK is regulated by CPK33. FEBS LETTERS, 591 (13): 1982-1992. http://dx.doi.org/10.1002/1873-3468.12687
Barnaud A, Vigouroux Y, Diallo MT, Saidou S, Piquet M, Barry MB, Bakasso Y, Zekraoui L, Rivallan R, Kane NA, Billot C (2017) Strong selfing inferred for fonio (Digitaria exilis) reproductive system: open up opportunity for breeding programs. Plant Genet. Res. Crop. Evo.l In press.. http://dx.doi.org/10.1007/s10722-017-0515-3
Burgarella C, Glémin S (2017) Population genetics and genome evolution of selfing species. eLS. http://dx.doi.org/10.1002/9780470015902.a0026804
Cherif, E; Zehdi-Azouzi, S; Crabos, A; Castillo, K; Chabrillange, N; Pintaud, JC; Salhi-Hannachi, A; Glemin, S; Aberlenc-Bertossi, F (2017) Evolution of sex chromosomes prior to speciation in the dioecious Phoenix species. JOURNAL OF EVOLUTIONARY BIOLOGY 29 (8) 1513-1522. http://dx.doi.org/10.1111/jeb.12887
CLEMENT Y., SARAH G., HOLTZ Y., HOMA F., POINTET S., CONTRERAS S., NABHOLZ B., SABOT FRANÇOIS, SAUNE L., ARDISSON M., BACILIERI R., BESNARD G., BERGER A., CARDI C., DE BELLIS F., FOUET O., JOURDA C., KHADARI B., LANAUD C., LEROY T., POT D., SAUVAGE C., SCARCELLI NORA, TREGEAR JAMES, VIGOUROUX YVES, YAHIAOUI N., RUIZ M., SANTONI S., LABOUISSE J. P., PHAM JEAN-LOUIS, DAVID J., GLEMIN S (2017). Evolutionary forces affecting synonymous variations in plant genomes. Plos Genetics, 2017, 13 (5), p. e1006799 [28 p.].http://dx.doi.org/10.1371/journal.pgen.1006799. http://dx.doi.org/10.1371/journal.pgen.1006799
Djedatin, G, Monat C, Engelen S, Sabot F. (2017) DuplicationDetector, a light weight tool for duplication detection using NGS data. Current Plant Biology, in press. http://dx.doi.org/10.1016/j.cpb.2017.07.001
Cosiaux A, Gardiner LM, Ouattara DN, Stauffer FW, Sonké B, Couvreur TLP (2017). An endangered West African rattan palm: Eremospatha dransfieldii. Biodivers Data J 5:e11176. http://dx.doi.org/10.3897/BDJ.5.e11176
DIACK O., KANE N. A., BERTHOULY CE?CILE, GUEYE M. C., DIOP B. M., FOFANA A., SY O., TALL H., ZEKRAOUI LEILA, PIQUET M., COUDERC MARIE, VIGOUROUX YVES, DIOUF D., BARNAUD ADELINE (2017). New genetic insights into pearl millet diversity as revealed by characterization of early- and late-flowering landraces from Senegal. Frontiers in Plant Science, 2017, 8, p. art. 818 [9 p. ]. http://dx.doi.org/10.3389/fpls.2017.00818.
FRAGOSO C. A., MORENO M., WANG Z. H., HEFFELFINGER C., ARBELAEZ L. J., AGUIRRE J. A., FRANCO N., ROMERO L. E., LABADIE K., ZHAO H. Y., DELLAPORTA S. L., LORIEUX MATHIAS (2017). Genetic architecture of a rice nested association mapping population.  G3-Genes Genomes Genetics, 2017, 7 (6), p. 1913-1926. http://dx.doi.org/10.1534/g3.117.041608
Donkpegan A. S. L., Doucet J. L., Migliore J., Duminil Jérôme, Dainou K., Pineiro R., Wieringa J. J., Champluvier D., Hardy O. J. (2017) Evolution in African tropical trees displaying ploidy-habitat association : the genus Afzelia (Leguminosae). Molecular Phylogenetics and Evolution, 107, 270-281.. http://dx.doi.org/10.1016/j.ympev.2016.11.004
Dupeyron M, Fernandez de Souza R, Couturon E, Crouzillat D, de Kochko A, Domingues DS, Hamon P., Guyot R. (2017). Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposon. Molecular Genetics and Genomics. 292 (4) : 741-754.. http://dx.doi.org/10.1007/s00438-017-1308-2
EISERHARDT W. L., COUVREUR THOMAS, BAKER W. J. (2017) Plant phylogeny as a window on the evolution of hyperdiversity in the tropical rainforest biome. New Phytologist, 2017, 214 (4), p. 1408-1422. http://dx.doi.org/10.1111/nph.14516.
Heffelfinger, C ; Fragoso, CA ; Lorieux, M (2017) Constructing linkage maps in the genomics era with MapDisto 2.0. BIOINFORMATICS, 2017, 33 (14): 2224-2225 . http://dx.doi.org/10.1093/bioinformatics/btx177
FUSTIER M. A., BRANDENBURG J. T., BOITARD S., LAPEYRONNIE J., EGUIARTE L. E., VIGOUROUX YVES, MANICACCI D., TENAILLON M. I. (2017) Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples. Molecular Ecology, 2017, 26 (10), p. 2738-2756. . http://dx.doi.org/10.1111/mec.14082
Ghogue, JP ; Sonke, B ; Couvreur, TLP. 2017. Taxonomic revision of the African genera Brieya and Piptostigma (Annonaceae). PLANT ECOLOGY AND EVOLUTION. 150 (2) :173-216. http://dx.doi.org/10.5091/plecevo.2017.113
GLATO K., AIDAM A., KANE N. A., BASSIROU D., COUDERC MARIE, ZEKRAOUI LEILA, SCARCELLI NORA, BARNAUD ADELINE, VIGOUROUX YVES (2017). Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient. Plos One, 2017, 12 (5), p. e0177697 [17 p.]. http://dx.doi.org/10.1371/journal.pone.0177697
Gros-Balthazard M, Galimberti M, Kousathanas A, Newton C, Ivorra S, Paradis L, Vigouroux Y, Carter R, Tengberg M, Battesti V, Santoni S, Falquet L, Pintaud J-C, Terral J-F, Wegmann D (2017) The discovery of wild date palms in Oman reveals a complex domestication history involving centers in the Middle East and Africa.  Current Biology. 27(14):2211-2218.. http://dx.doi.org/10.1016/j.cub.2017.06.045
Hamon Perla, Grover C. E., Davis A. P., Rakotomalala J. J., Raharimalala N. E., Albert V. A., Sreenath H. L., Stoffelen P., Mitchell S. E., Couturon Emmanuel, Hamon Serge, Kochko de Alexandre, Crouzillat D., Rigoreau M., Sumirat U., Akaffou S., Guyot Romain. (2017). Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species GBS coffee phylogeny and the evolution of caffeine content. Molecular Phylogenetics and Evolution, 109, 351-361. http://dx.doi.org/10.1016/j.ympev.2017.02.009
Lanciano Sophie, Carpentier M. C., Llauro C., Jobet E., Robakowska-Hyzorek D., Lasserre E., Ghesquière Alain, Panaud O., Mirouze Marie. (2017). Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants. Plos Genetics, 13 (2). http://dx.doi.org/10.1371/journal.pgen.1006630
Ingouff M., Selles Benjamin, Michaud Caroline, Vu T. M., Berger F., Schorn A. J., Autran Daphné, Van Durme M., Nowack M. K., Martienssen R. A., Grimanelli Daniel. (2017). Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes and Development, 31 (1), 72-83.. http://dx.doi.org/10.1101/gad.289397.116
Kochko, A. de, Hamon, S., Guyot, R., Couturon, E., Poncet, V., Dubreuil-Tranchant, C., Crouzillat, D., Rigoreau, M. & Hamon, P. (2017). Omics applications: Coffee. In: Biotechnology of Plantation Crops. (ed. by P. Chowdappa, A. Karun, M.K. Rajesh and S.V. Ramesh), pp. 589-606. Daya Publishing House, New Delhi.. http://dx.doi.org/
Lanciano Sophie, Mirouze Marie (2017) . DNA Methylation in Rice and Relevance for Breeding. Epigenomes 1 (2) 10. http://dx.doi.org/doi:10.3390/epigenomes1020010
Monat C., Pera B., Ndjiondjop M. N., Sow M., Dubreuil Tranchant C., Bastianelli L., Ghesquière A., Sabot F. Monat Cécile, Pera B., Ndjiondjop M. N., Sow M., Dubreuil Tranchant Christine, Bastianelli L., Ghesquière Alain, Sabot François. (2017).
De novo assemblies of three Oryza glaberrima accessions provide first insights about pan-genome of African rices. Genome Biology and Evolution, 9 (1), 1-6.. http://dx.doi.org/10.1093/gbe/evw253
Luebert F., Couvreur Thomas, Gottschling M., Hilger H. H., Miller J. S., Weigend M. (2017). Historical biogeography of Boraginales : West Gondwanan vicariance followed by long-distance dispersal ? Journal of Biogeography, 44 (1), 158-169. . http://dx.doi.org/10.1111/jbi.12841
Maggia M. E., Vigouroux Y., Renno J.F., Duponchelle F., Desmarais E., Nunez Rodriguez J., Garcia-Davila C., Carvajal-Vallejos F. M., Paradis E., Martin J. F., Mariac C. (2017) DNA metabarcoding of Amazonian ichthyoplankton swarms. Plos one 12 (1): p. e0170009 [14 p.]. http://dx.doi.org/10.1371/journal.pone.0170009
Makhzoum A., Yousefzadi M., Malik S., Gantet Pascal, Tremouillaux-Guiller J. (2017). Strigolactone biology: genes, functional genomics, epigenetics and applications. Critical Reviews in Biotechnology, 37 (2), 151-162.. http://dx.doi.org/10.3109/07388551.2015.1121967
Mehrabi Z., Lashermes P. (2017) Protecting the origins of coffee to safeguard its future. Nature Plant, 3 (1) p. art. 16209 [3 p.]. http://dx.doi.org/10.1038/nplants.2016.209
Pidon Hélène, Ghesquière Alain, Chéron Sophie, Issaka S., Hébrard Eugénie, Sabot François, Kolade O., Silué D., Albar Laurence. (2017). Fine mapping of RYMV3 : a new resistance gene to Rice yellow mottle virus from Oryza glaberrima.
Theoretical and Applied Genetics, 130 (4), 807-818.. http://dx.doi.org/10.1007/s00122-017-2853-0
Monthe FS, Duminil J, Tosso F, Migliore J, Hardy OJ (2017) Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae). Applications in Plant Sciences 5(2):1600130. http://dx.doi.org/10.3732/apps.1600130
MOREIRA P. A., MARIAC CÉDRIC, ZEKRAOUI LEILA, COUDERC MARIE, RODRIGUES D. P., CLEMENT C. R., VIGOUROUX YVES (2017) Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin. Evolutionary Applications, 2017, 10 (6), p. 577-589. http://dx.doi.org/10.1111/eva.12474
Moussouni S., Pintaud J.C., Vigouroux Y., Bouguedoura N. (2017) Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae) : heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity. Plos One 12 (4) p. e0175232 [14 p.]. http://dx.doi.org/10.1371/journal.pone.0175232
NDOUR PMS, GUEYE M, BARAKAT M, ORTET P, BERTRAND-HULEUX M, PABLO A-L, DEZETTE D, CHAPUIS LARDY L, ASSIGBETSE K, KANE N, VIGOUROUX Y, ACHOUAK W, NDOYE I, HEULIN T, Cournac L. 2017. Pearl millet genetic traits impact rhizobacterial diversity and rhizosphere soil aggregation. Front. Plant Sci., 27 July 2017. http://dx.doi.org/10.3389/fpls.2017.01288
Ortiz J. P. A., Revale S., Siena L. A., Podio M., Delgado L., Stein J., Leblanc Olivier, Pessino S. C. (2017). A reference floral transcriptome of sexual and apomictic Paspalum notatum. BMC Genomics, 18. p. art. 318 [14 p.]. http://dx.doi.org/10.1186/s12864-017-3700-z
OTHMANI A., COLLIN MYRIAM, SELLEMI A., JAIN S. M., DRIRA N., ABERLENC BERTOSSI FRE?DE?RIQUE (2017) First reported case of spontaneous hermaphrodism in female date palm (Phoenix dactylifera L.), cv 'Alligue'. Journal of Horticultural Science and Biotechnology, 2017, 92 (4), p. 376-388. http://dx.doi.org/10.1080/14620316.2017.1280379.
Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity.119(2):88-94.. http://dx.doi.org/10.1038/hdy.2017.13.
Petitot AS, Kyndt T, Haidar R, Dereeper A, Collin M, Engler JD, Gheysen G, Fernandez D. (2017). Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots. ANNALS OF BOTANY, 119 (5), 885-899. http://dx.doi.org/10.1093/aob/mcw256
Richards CL, C Alonso, C Becker, O Bossdorf, E Bucher, M Colome-Tatche, W Durka, J Engelhardt, B Gaspar, A Gogol-Doring, I Grosse, T P. van Gurp, K Heer, I Kronholm, C Lampei, V Latzel, Mirouze Marie, L Opgenoorth, O Paun, S Prohaska, S A. Rensing, P Stadler, E Trucchi, K Ullrich, K Verhoeven (2017) Ecological plant epigenetics: Evidence from model and non-model species, and the way forward. biorXiv. http://dx.doi.org/https://doi.org/10.1101/130708
Rajeev K. Varshney,Chengcheng Shi, Mahendar Thudi, CedricMariac, Jason Wallace, He Zhang,Arindam Ghatak, Palak Chaturvedi, YushengZhao, Xiyin Wang, AbhishekRathore, Jianping Wang, Rakesh Srivastava,Annapurna Chitikineni, Guangyi Fan, Somashekhar Punnuri, S. K. Gupta, Yong Jiang, MarieCouderc, Prasad Bajaj, MohanA.V.S.K. Katta, Dev R Paudel, K. D. Mungra,Wenbin Chen, Karen R. Harris-Shultz,Vanika Garg, Neetin Desai, Dadakhalandar Doddamani, Ndjido Kane, Joann A.Conner, Sabarinath Subramaniam, Om PrakashYadav, Cécile Berthouly-Salazard,Falalou Hamidu, Xinming Liang, Jeremy Clotault, Mame Codou Gueye,Ramanujulu Sunkar, Christian Dupuy, FrancescaSparvoli, Shifeng Cheng, R. S.Mahala, Bharat Singh, Rattan S. Yadav, EricLyons, Swapan K. Datta, C.Tom Hash, Katrien M. Devos, EdwardBuckler, Jeffrey L. Bennetzen,Andrew H. Paterson, Peggy Ozias-Akins, StefaniaGrando, Jun Wang, Jochen C. Reif,Wolfram Weckwerth, Xin Liu, Yves Vigouroux, Xun Xu (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. In press.. http://dx.doi.org/In press.
Rhoné Bénédicte, Mariac Cédric, Couderc Marie, Berthouly Cécile, Ousseini I. S., Vigouroux Yves. (2017). No excess of cis-regulatory variation associated with intraspecific selection in wild pearl millet (Cenchrus americanus). Genome Biology and Evolution, 9 (2), 388-397.. http://dx.doi.org/10.1093/gbe/evx004
Sanin MJ, Zapata P, Pintaud JC, Galeano G, Bohórquez A, Tohme J, Hansen MM (2017) Up and down the blind alley: population divergence with scant gene flow in an endangered tropical lineage of Andean palms (Ceroxylon quindiuense clade: Ceroxyloideae) J Hered 108(3):288-298. http://dx.doi.org/10.1093/jhered/esx006
Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Saune L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Peros JP, Labouisse JP, Pham JL, David J, Glemin S, Ruiz M. (2017). A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. MOLECULAR ECOLOGY RESOURCES, 17 (3), 565-580.. http://dx.doi.org/10.1111/1755-0998.12587
Scarcelli N, Chaïr H, Causse S, Vesta R, Couvreur T, Vigouroux Y (2107) Crop wild relative conservation: wild yams are not that wild. Biological Conservation 210:325-333. http://dx.doi.org/10.1016/j.biocon.2017.05.001
Selles Benjamin, Zannini F., Couturier J., Jacquot J. P., Rouhier N. (2017). Atypical protein disulfide isomerases (PDI) : comparison of the molecular and catalytic properties of poplar PDI-A and PDI-M with PDI-L1A. Plos One, 12 (3).. http://dx.doi.org/10.1371/journal.pone.0174753
Sosef M. S. M., Dauby G., Blach-Overgaard A., van der Burgt X., Catarino L., Damen T., Deblauwe V., Dessein S., Dransfield J., Droissart Vincent, Duarte M. C., Engledow H., Fadeur G., Figueira R., Gereau R. E., Hardy O. J., Harris D. J., de Heij J., Janssens S., Klomberg Y., Ley A. C., Mackinder B. A., Meerts P., de Poel J. L. V., Sonke B., Stevart T., Stoffelen P., Svenning J. C., Sepulchre P., Zaiss Rainer, Wieringa J. J., Couvreur Thomas. (2017) Exploring the floristic diversity of tropical Africa. BMC Biology, 15. http://dx.doi.org/10.1186/s12915-017-0356-8
Sriwichai W., Collin Myriam, Tranbarger Timothy, Berger Jacques, Avallone S. (2017). Improvement of the content in bioaccessible lipophilic micronutrients in raw and processed drumstick leaves (Moringa oleifera Lam.). LWT - Food Science and Technology, 75, 279-285.. http://dx.doi.org/10.1016/j.lwt.2016.09.001
STULL G. W., JOHNSON D. M., MURRAY N. A., COUVREUR THOMAS, REEGER J. E., ROY C. M. (2017) Plastid and seed morphology data support a revised infrageneric classification and an african origin of the pantropical genus Xylopia (Annonaceae). Systematic Botany, 2017, 42 (2), p. 211-225. http://dx.doi.org/10.1600/036364417x695484. http://dx.doi.org/10.1600/036364417x695484
Ta K. N., Adam Hélène, Staedler Y. M., Schonenberger J., Harrop T., Tregear James, Do N. V., Gantet Pascal, Ghesquière Alain, Jouannic Stefan. (2017). Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice. Evodevo, 8.. http://dx.doi.org/10.1186/s13227-017-0065-y
Thieme M, Lanciano Sophie, Balzergue S, Daccord N, Mirouze Marie, Bucher E. (2017) Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding. Genome Biol. 2017 Jul 7;18(1):134. http://dx.doi.org/doi:10.1186/s13059-017-1265-4
Tranbarger Timothy, Fooyontphanich K., Roongsattham P., Pizot M., Collin Myriam, Jantasuriyarat C., Suraninpong P., Tragoonrung S., Dussert Stéphane, Verdeil J. L., Morcillo F. (2017). Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening : evidence for widespread conservation within monocot and eudicot lineages. Frontiers in Plant Science, 8.. http://dx.doi.org/10.3389/fpls.2017.00603
Tranbarger Timothy, Tucker M. L., Roberts J. A., Meir S. (2017) Plant organ abscission : from models to crops [Editorial]. Frontiers in Plant Science, 8.. http://dx.doi.org/10.3389/fpls.2017.00196
Veranso-Libalah, MC ; Stone, RD ; Fongod, AGN ; Couvreur, TLP ; Kadereit, G. 2017. Phylogeny and systematics of African Melastomateae (Melastomataceae). TAXON 66 (3): 584-614. . http://dx.doi.org/10.12705/663.5