DIversité - Adaptation - DEveloppement des plantes

Okoma P, Akaffou S, De Reffye P, Hamon P, Hamon S, Konan O, Kouassi KH, Legnate H, Letort V, Sabatier S (2018) Estimation of stem and leaf dry biomass using a non-destructive method applied to African Coffea species. Agroforestry Systems 92: 667-675

De Castro Nunes R. Orozco-Arias S. Crouzillat D. Mueller L, Strickler S, Descombes P, Fournier C, Moine D, de Kochko A, Yuyama P, Laforga Vanzela A, Guyot R. (2018) Structure and distribution of centromeric retrotransposons at diploid and allotetraploid Coffea centromeric and pericentromeric regions. Frontiers in Plant Science: Volume 9, Page 175

Tournebize R, Manel S, Vigouroux Y, Munoz F, de Kochko A, V P (2017) Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda. . PLoS ONE 12: e0183412

Taedoumg H, Sonke B, Hamon P, De Block P (2017) Craterispermum capitatum and C. gabonicum (Rubiaceae): two new species from the Lower Guinean and Congolian Domains. Phytokeys: 103-118

Hamon P, Grover CE, Davis AP, Rakotomalala J-J, Raharimalala NE, Albert VA, Sreenath HL, Stoffelen P, Mitchell SE, Couturon E, Hamon S, de Kochko A, Crouzillat D, Rigoreau M, Sumirat U, Akaffou S, Guyot R (2017) Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content. Molecular Phylogenetics and Evolution 109: 351-361

Dupeyron M, de Souza RF, Hamon P, de Kochko A, Crouzillat D, Couturon E, Domingues DS, Guyot R (2017) Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons. Molecular Genetics and Genomics 292: 741-754

de Kochko A, Hamon S, Guyot R, Couturon E, Poncet V, Dubreuil Tranchant C, Crouzillat D, Rigoreau M, Hamon P (2017) Omics applications : Coffee. In: Chowdappa P, Karun A, Rajesh MK, Ramesh SV (eds) Biotechnology of plantation crops. Daya Publishing House, New Delhi, pp 589-606

Guyot R, Darré T, Dupeyron M, de Kochko A, Hamon S, Couturon E, Crouzillat D, Rigoreau M, Rakotomalala J-J, Raharimalala NE, Akaffou SD, Hamon P (2016) Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories. Molecular Genetics and Genomics 291: 1979-1990

Gomez C, Despinoy M, Hamon S, Hamon P, Salmon D, Akaffou DS, Legnate H, de Kochko A, Mangeas M, Poncet V (2016) Shift in precipitation regime promotes interspecific hybridization of introduced Coffea species. Ecology and Evolution 6: 3240-3255

Couturon E, Raharimalala NE, Rakotomalala JJ, Hamon S, de Kochko A, Guyot R, Hamon P (2016) Caféiers sauvages : un trésor en péril au coeur des forêts tropicales ! = Wild coffee-trees : a threatened treasure in the heart of tropical forests ! Association Biodiversité, Ecovalorisation et Caféiers, Montpellier

Roncal J, Guyot R, Hamon P, Crouzillat D, Rigoreau M, Konan ONG, Rakotomalala J-J, Nowak MD, Davis AP, de Kochko A (2015) Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species. Molecular Genetics and Genomics 291: 155-168

Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, de Kochko A, Sarramegna-Burtet V, Job D (2015) The Amborella vacuolar processing enzyme family. Frontiers in Plant Science 6

Mueller L, Strickler S, Domingues D, Pereira L, Andrade A, Marraccini P, Ming R, Wai J, Albert V, Giuliano G, Fiore A, Pietrella M, Aprea G, Descombes P, Moine D, Guyot R, Poncet V, Hamon P, Hamon S, Dubreuil Tranchant C, Couturon E, de Kochko A, Lepelley M, Bellanger L, Merot-L'Anthoene V, Vandecasteele C, Rigoreau M, Crouzillat D, Paschoal Rossi A, Sankoff D, Zheng C, Kuhn G, Korlach J, Chin J (2015) Towards a better understanding of the Coffea arabica genome structure.  Proceedings of the 25th international conference on coffee science. ASIC, pp p 42-45

Hamon P, Rakotomalala JJ, Akaffou S, Razafinarivo NJ, Couturon E, Guyot R, Crouzillat D, Hamon S, de Kochko A (2015) Caffeine-free species in the genus Coffea. In: Preedy V (ed) Coffee in health and disease prevention. Academic Press, San Diego, pp 39-44

Hamon P, Hamon S, Razafinarivo NJ, Guyot R, Siljak-Yakovlev S, Couturon E, Crouzillat D, Rigoreau M, Akaffou S, Rakotomalala JJ, de Kochko A (2015) Coffea genome organization and evolution. In: Preedy V (ed) Coffee in health and disease prevention. Academic Press, San Diego, pp 29-37

Dias ES, Hatt C, Hamon S, Hamon P, Rigoreau M, Crouzillat D, Carareto CMA, de Kochko A, Guyot R (2015) Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families. Plant Molecular Biology 89: 83-97

Chaparro C, Gayraud T, de Souza RF, Domingues DS, Akaffou S, Laforga Vanzela AL, de Kochko A, Rigoreau M, Crouzillat D, Hamon S, Hamon P, Guyot R (2015) Terminal-Repeat Retrotransposons with GAG Domain in Plant Genomes: A New Testimony on the Complex World of Transposable Elements. Genome Biology and Evolution 7: 493-504

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