DIversité - Adaptation - DEveloppement des plantes

2017


Akakpo R, Scarcelli N, Chair H, Dansi A, Djedatin G, Thuillet AC, Rhone B, Francois O, Alix K, Vigouroux Y (2017) Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. BMC Genomics 18:782

Ambrósio Moreira P, Mariac C, Zekraoui L, Couderc M, Garcia Luize B, Picanço DR, Clement CR, Vigouroux Y (2017) Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin. Evolutionary Applications. In press

Azani N, [...] Duminil J [...] [The Legume Phylogeny Working Group (LPWG)] (2017) A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny. Taxon 66(1):44-77

Barnaud A, Vigouroux Y, Diallo MT, Saidou S, Piquet M, Barry MB, Bakasso Y, Zekraoui L, Rivallan R, Kane NA, Billot C (2017) Strong selfing inferred for fonio (Digitaria exilis) reproductive system: open up opportunity for breeding programs. Plant Genet. Res. Crop. Evol. In press

Burgarella C, Glémin S (2017) Population genetics and genome evolution of selfing species. eLS. In press

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S (2017) Evolutionary forces affecting synonymous variations in plant genomes. Plos Genetics 13(5):e1006799

Cosiaux A, Gardiner LM, Ouattara DN, Stauffer FW, Sonké B, Couvreur TLP (2017) An endangered West African rattan palm: Eremospatha dransfieldii. Biodivers Data J 5:e11176

Diack O, Kane NA , Berthouly-Salazar C, Guèye MC, Diop BM, Fofana A, Sy O, Tall H, Zékraoui L, Piquet M, Couderc M, Vigouroux Y, Diouf D, Barnaud A (2017) New genetic insights into pearl millet diversity as revealed by characterization of early- and late-flowering landraces from Senegal. Front. Plant Sci. 8:818

Donkpegan ASL, Doucet J-L, Duminil J, Daïnou K, Pineiro R, Wieringa J, Champluvier D, Hardy OJ (2017) Evolution in African tropical trees displaying ploidy-habitat association: The genus Afzelia (Leguminosae). Molecular Phylogenetic and Evolution 107:270-281

Eiserhardt WL, Couvreur TLP, Baker WJ (2017) Plant phylogeny as a window on the evolution of hyperdiversity in the tropical rainforest biome. New Phytologist. In press

Fustier MA, Brandenburg J, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI (2017). Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples. Molecular Ecology. In press.

Glato K, Aidam A, Kane NA, Bassirou D, Couderc M, Zekraoui L, Scarcelli N, Barnaud A, Vigouroux Y (2017) Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient. PLoS One 12(5):e0177697

Gros-Balthazard M, Galimberti M, Kousathanas A, Newton C, Ivorra S, Paradis L, Vigouroux Y, Carter R, Tengberg M, Battesti V, Santoni S, Falquet L, Pintaud J-C, Terral J-F, Wegmann D (2017) The discovery of wild date palms in Oman reveals a complex domestication history involving centers in the Middle East and Africa. Current Biology. In press

Jalonen R, Valette M, Boshier D, Duminil J, Thomas E (2017) Forest and landscape restoration severely constrained by a lack of attention to the quantity and quality of tree seed: insights from a global survey. Conservation Letters In press

de Kochko A, Hamon S, Guyot R, Couturon E, Poncet V, Dubreuil Tranchant C, Crouzillat D, Rigoreau M, Hamon P (2017). Omics applications : Coffee. In: Chowdappa P, Karun A, Rajesh MK, Ramesh SV (eds.) Biotechnology of plantation crops. New Delhi: Daya Publishing House, 589-606

Lompo D, Vinceti B, Gaisberger H, Konrad H, Duminil J, Ouedraogo M, Sina S, Geburek T (2017) Genetic conservation in Parkia biglobosa (Fabaceae: Mimosoideae) - what do we know? Silvae Genetica In press

Maggia ME, Vigouroux Y, Renno JF, Duponchelle F, Desmarais E , Nunez J, Garcia-Davila C, Carvajal F, Paradis E, Martin JF, Mariac C (2017) DNA metabarcoding of Amazonian ichthyoplankton swarms. PlosOne 12(1):e0170009

Monthe FS, Duminil J, Tosso F, Migliore J, Hardy OJ (2017) Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae). Applications in Plant Sciences 5(2):1600130

MontheKameni FS, Hardy OJ, Doucet JL, Loo J, Duminil J (2017) Extensive seed and pollen dispersal in the rain forest tree Entandrophragma cylindricum (Meliaceae) inferred from indirect and direct analyses. Molecular Ecology In press

Moussouni S , Pintaud JC, Vigouroux Y, Bouguedoura N (2017) Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity. PLoS ONE 12(4):e0175232

Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis Lardy L, Assigbetse K, Kane N, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L (2017) Pearl millet genetic traits impact rhizobacterial diversity and rhizosphere soil aggregation. Front Plant Sci 8:1288

Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity. in press

Rhoné B, Mariac C, Couderc M, Berthouly-Salazar C, Ousseini IS, Vigouroux Y (2017) No excess of cis-regulatory variation associated with intra-specific selection in wild pearl millet (Cenchrus americanus). Genome Biology Evolution 9(2):388-397

Sanin MJ, Zapata P, Pintaud JC, Galeano G, Bohórquez A, Tohme J, Hansen MM (2017) Up and down the blind alley: population divergence with scant gene flow in an endangered tropical lineage of Andean palms (Ceroxylon quindiuense clade: Ceroxyloideae). J Hered 108(3):288-298

Scarcelli N, Chaïr H, Causse S, Vesta R, Couvreur T, Vigouroux Y (2017) Crop wild relative conservation: wild yams are not that wild. Biological Conservation 210:325-333

Varshney R, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava R, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta S, Wang H, Jiang Y, Couderc M, Katta M, Paudel D, Mungra K, Chen W, Harris-Shultz K, Garg MV, Desai N, Doddamani D, Kane N, Conner J, Ghatak A, Chaturvedi P, Subramaniam S, Yadav O, Berthouly-Salazar C, Falalou H, Wang J, Liang X, Clotault J, Upadhyaya H, Cubry P, Rhoné B, Gueye M, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala R, Singh B, Yadav R, Lyons E, Datta S, Hash C, Devos K, Buckler E, Bennetzen J, Paterson A, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif J, Liu X, Vigouroux Y, Xu X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. In press

Sosef MSM, Dauby G, Blach-Overgaard A, van der Burgt X, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Stévart T, Stoffelen P, Svenning JC, Sepulchre P, Zaiss R, Wieringa JJ, Couvreur TLP (2017) Exploring the floristic diversity of tropical Africa. BMC Biology 15:15

Tournebize R, Manel S, Vigouroux Y, Munoz F, de Kochko A, Poncet V (2017) Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda. PLoS One, 12, e0183412


2016

Addisalem AB, Duminil J, Wouters D, Bongers F, Smulders MJM (2016) Fine-scale spatial genetic structure in the frankincense tree Boswellia papyrifera (Del.) Hochst. and implications for conservation. Tree Genetics & Genomes 12:86

Ambrósio Moreira P, Mariac C, Scarcelli N, Couderc M, Picanço Rodrigues D, Clement CR, Vigouroux Y (2016) Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication. Application in Plant Science. 4(10):1600048

Becerra W, [...] Pintaud JC, [...] (2016) Morichales, cananguchales y otros palmares inundables de Suramérica. Parte II: Colombia, Venezuela, Brasil, Perú, Bolivia, Paraguay, Uruguay y Argentina. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, 573p

Berthouly-Salazar C, Mariac C, Couderc M, Ousseini IS, Santoni S, Tenaillon M, Vigouroux Y (2016) Strategies for detecting climate adaptations in wild pearl millet for future breeding use. In: Enhancing crop genepool use - Capturing wild relative and landrace diversity for crop improvement. Maxted N, Dulloo ME, Ford-Lloyd BV (eds.). Cabi, UK

Berthouly-Salazar C, Mariac C, Couderc M, Pouzadoux J, Floc'h JB, Vigouroux Y (2016) Genotyping-by-sequencing SNP identification for crops without a reference genome: using transcriptome based mapping as an alternative strategy. Frontiers in Plant Science 7:777

Berthouly-Salazar C, Thuillet A-C, Rhoné B, Mariac C, Salia Ousseini I, Couderc M , Tenaillon M, Vigouroux Y (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Molecular Ecology 25(21):5500-5512

Bourobou Bourobou PH, Niangadouma R, Issembe Y, Couvreur TLP (2016)Two new records of palm species for Gabon: Sclerosperma profizianum Valk. & Sunder. and Eremospatha quiquecostulata Becc.. Biodivers Data J 4:e10187

Burgarella C, Chantret N, Gay L, Prosperi JM, Bonhomme M, Tiffin P, Young ND, Ronfort J (2016) Adaptation to climate through flowering phenology: a case study in Medicago truncatula. Molecular Ecology 25(14): 3397-3415

del Castillo AMR, Garcia-Davila C, Mejia K, Pintaud JC (2016) Attalea: Insights into the diversity and phylogeny of an intriguing genus. Palms 60(3):109-124

Cherif E, Zehdi-Azouzi S, Crabos A, Castillo K, Chabrillange N, Pintaud JC, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F (2016) Evolution of sex chromosomes prior to speciation in the dioecious Phoenix species. Journal of Evolutionary Biology 29(8):1513-1522

Couvreur TLP, Niangadouma R (2016) New species of Uvariopsis (Annonaceae) and Laccosperma (Arecaceae/Palmae) from Monts de Cristal, Gabon. PhytoKeys 68:1-8

Dauby G, Zaiss R, Blach-Overgaard A, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Sosef MSM, Stévart T, Stoffelen P, Svenning JC, Sepulchre P, van der Burgt X, Wieringa JJ, Couvreur TLP (2016) RAINBIO: a mega-database of tropical African vascular plants distributions. PhytoKeys 74:1-18

Deblauwe V, Droissart V, Bose R, Sonke B, Blach-Overgaard A, Svenning JC, Wieringa JJ, Ramesh BR, Stevart T, Couvreur TLP (2016) Remotely sensed temperature and precipitation data improve species distribution modelling in the tropics. Global Ecology and Biogeography 25(4):443-454

Dubuisson JY, Hennequin S, Droissart V, Deblauwe V (2016) Hymenophyllum senterreanum Dubuisson & Deblauwe, sp. nov. (Hymenophyllaceae) and its relatives in western Central Africa. Phytotaxa 257(3):287-294

Duminil J, Mendene Abessolo DT, Ndiade Bourobou D, Doucet J-L, Loo J, Hardy OJ (2016) High selfing rate, limited pollen dispersal and inbreeding depression in the emblematic African rain forest tree Baillonella toxisperma - management implications. Forest Ecology & Management 379:20-29

Faye A, Deblauwe V, Mariac C, Richard D, Sonké B, Vigouroux Y, Couvreur TLP (2016) Phylogeography of the genus Podococcus (Palmae/Arecaceae) in Central African rain forests: Climate stability predicts unique genetic diversity. Molecular Phylogenetics and Evolution 105:126-138

Faye A, Pintaud JC, Baker WJ, Vigouroux Y, Sonke B, Couvreur TLP (2016) Phylogeny and diversification history of African rattans (Camamoideae, Ancistrophyllinae). Botanical Journal of the Linnean Society 182(2):256-271

Freitas C, Meerow AW, Pintaud JC, Henderson A, Noblick L, Costa FRC, Barbosa CE, Barrington D (2016) Phylogenetic analysis of Attalea (Arecaceae): insights into the historical biogeography of a recently diversified Neotropical plant group. Botanical Journal of the Linnean Society 182(2):287-302

Gomez C, Despinoy M, Hamon S, Hamon P, Salmon D, Akaffou DS, Legnate H, de Kochko A, Mangeas M, Poncet V (2016) Shift in precipitation regime promotes interspecific hybridization of introduced Coffea species. Ecology and Evolution 6:3240-3255

Goulamoussène Y, Bedeau C, Descroix L, Deblauwe V, Linguet L, Hérault B (2016) Weak Environmental Controls of Tropical Forest Canopy Height in the Guiana Shield. Remote sensing 8(9):747

Gros-Balthazard M, Newton C, Ivorra S, Pierre MH, Pintaud JC, Terral JF (2016) The Domestication Syndrome in Phoenix dactylifera Seeds: Toward the Identification of Wild Date Palm Populations. PLOS ONE 11(3):e0152394

Luebert F, Couvreur TLP, Gottschling M, Hilger H, Miller JS, Weigend M (2016) Historical biogeography of Boraginales: West Gondwanan vicariance followed by long-distance dispersal?. Journal of Biogeography 44(1):158-169

Mariac C, Ousseini IS, Alio AK, Judgé H, Pham JL, Bezançon G, Ronfort J, Descroix L, Vigouroux Y (2016) Spatial and temporal variation in selection of genes associated with pearl millet varietal quantitative traits in situ. Frontiers in Genetics 7:130

Marshall AR, Couvreur TLP, Summers AM, Deere NJ, Luke WRQ, Ndangalasi HJ, Sparrow S, Johnson DM (2016) A new species in the tree genus Polyceratocarpus (Annonaceae) from the Udzungwa Mountains of Tanzania. PhytoKeys 63:63-76

Moraes MR, Pintaud JC (2016) Attalea blepharopus Mart. (Arecaceae) from Bolivia revisited since Martius. Candollea 71:27-32

Ndoye F, Diedhiou AG, Gueye M, Fall D, Barnaud A, Sy MO, Noba K, Diouf D, Kane A (2016) Réponse du fonio blanc (Digitaria exilis Stapf) à l'inoculation avec des champignons mycorhiziens à arbuscules en conditions semi-contrôlées. Journal of Applied Biosciences 103

Ngom A, Mbaye MS, Barnaud A, Kane A, Ba N, Gueye M, Camara AA, Ndour YB, Noba K (2016) Révision du genre Digitaria Haller (Poaceae) au Sénégal : proposition d'une clé de détermination pour une meilleure identification des espèces. International Journal of Biological and Chemical Sciences 10(1)

Passot S, Gnacko F, Moukouanga D, Lukas M, Guyomarc'H S, Moreno Ortega B, Atkinson J, Niang M, Bennett M, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science 7:829

Pham MH, Tran XH, Berthouly-Salazar C, Tixier-Boichard M, Chen CF, Lee YP (2016) Monitoring of genetic diversity in Taiwan conserved chickens assessed by pedigree and molecular data. Livestock Science 184:85-91

Pinel-Galzi A, Dubreuil-Tranchant C, Hébrard E, Mariac C, Ghesquière A, Albar L (2016) Mutations in rice yellow mottle virus polyprotein P2a involved in RYMV2 gene resistance breakdown. Frontiers in Plant Science 7

Pintaud JC, Rodriguez Del Castillo AM, Ferreira EJL, Moraes M R. Mejia K (2016) Towards a revision of Attalea in Western Amazonia. Palms 60(2):57-77

Sanin MJ, Kissling WD, Bacon CD, Borchsenius F, Galeano G, Svenning JC, Olivera J, Ramuirez R, Trénel P, Pintaud JC (2016) The Neogene rise of the tropical Andes facilitated diversification of wax palms (Ceroxylon: Arecaceae) through geographical colonization and climatic niche separation. Botanical Journal of the Linnean Society 182(2):303-317

Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M (2016) A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Molecular Ecology Ressources. doi: 10.1111/1755-0998.12587

Sarrazin F, Pham JL, Reboud X, Lecomte J (2016) Conséquences évolutives des approches par services écosystémiqes. In: Valeurs de la biodiversité et services écosystémiques - Perspectives interdisciplinaires. Riche P, Geijzendorffer, Level H, Maris V (eds.) Edition Quae

Scarcelli N, Mariac C, Couvreur TLP, Faye A, Richard D, Sabot F, Berthouly-Salazar C, Vigouroux Y (2016) Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?. Molecular Eciology Resources 16(2):434-445

Ta KN, Sabot F, Adam H, Vigouroux Y, DeMita S, Ghesquiere A, Vinh DN, Gantet P, Jouannic S (2016) miR2118-triggered phased siRNAs are differentially expressed duringthe panicle development of wild and domesticated African rice species. Rice 9(1):10

Tosso F, Doucet J-L, Kaymak E, Daïnou K, Duminil J, Hardy OJ (2016) Microsatellite development in Guibourtia tessmannii (Harms) J.Leonard and cross-amplification on congeneric species uncover a polyploid complex. Applications in Plant Sciences 4(7):1600029

Zango O, Rey H, Bakasso Y, Lecoustre R, Aberlenc F, Pintaud JC (2016) Local practices and knowledge associated with date palm cultivation in Southeastern Niger. Agricultural Sciences 7(9)

Zehdi-Azouzi S, Cherif E, Guenni K, Ben Abdelkrim A, Bermil A, Rhouma S, Ben Salah M, Santoni S, Pintaud JC, Aberlenc-Bertossi F, Salhi Hannachi A (2016) Endemic insular and coastal Tunisian date palm genetic diversity. Genetica 144(2):181-190


2015

Allie E, Pelissier R, Engel J, Petronelli P, Freycon V, Deblauwe V, Soucemarianadin L, Weigel J, Baraloto C (2015) Pervasive local-scale tree-soil habitat association in a tropical forest community. Plos One 10(11):0141488

Coomes OT, McGuire SJ, Garine E, Caillon S Mckey D, Demeulenaere E, Jarvis D, Aistara G, Barnaud A, Clouvel P, Emperaire L, Louafi S, Martin P, Massol F, Pautasso M, Violon C, Wencélius J (2015) Farmer seed networks make a limited contribution to agriculture? Four common misconceptions. Food Policy 56:41-50

Couvreur TLP (2015) Odd man out: why are there fewer plant species in African rain forests?. Plant Systematics and Evolution 301(5):1299-1313

Couvreur TLP, Niangadouma R, Sonke B, Sauquet H (2015) Sirdavidia, an extraordinary new genus of Annonaceae from Gabon. Phytokeys 46:1-19

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G (2015) The coffee genome hub: a resource for coffee genomes. Nucleic Acid Research 43:D1028-D1035

Haider MS, Khan IA, Jaskani MJ, Naqvi SA, Hameed M, Azam M, Khan AA, Pintaud JC (2015) Assessment of morphological attributes of date palm accessions of diverse agro-ecological origin. Pakistan Journal of Botany 47(3):1143-1151

Ludeña B, Cueva A, Riofrio L, Naranjo C, Bastidas C, Pintaud JC, Suárez JP (2015) Non-coding chloroplast regions analysis within the Orchidaceae family in Southern Ecuador. Revista Bionatura 1(1):69-73

Massoni J, Couvreur TLP, Sauquet, H (2015) Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms). BMC Evolutionary Biology 15:49

Moumouni KH, Kountche BA, Jean M, Hash CT, Vigouroux Y, Haussmann BIG, Belzile F (2015) Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach. Molecular Breeding 35(5).

Mueller L, Strickler S, Domingues D, Pereira L, Andrade A, Marraccini P, Ming R, Wai J, Albert V, Giuliano G, Fiore A, Pietrella M, Aprea G, Descombes P, Moine D, Guyot R, Poncet V, Hamon P, Hamon S, Dubreuil Tranchant C, Couturon E, de Kochko A, Lepelley M, Bellanger L, Merot-l'Anthoene V, Vandecasteele C, Rigoreau M, Crouzillat D, Paschoal Rossi A, Sankoff D, Zheng C, Kuhn G, Korlach J, Chin J (2015) Towards a better understanding of the Coffea arabica genome structure. Proceedings of the 25th international conference on coffee science, ASIC, 2015, p.42-45

Naqvi SA, Khan IA, Pintaud JC, Jaskani MJ, Ali A (2015) Morphological characterization of Pakistan date palm (Phoenix dactylifera L.) genotypes. Pakistan Journal of Agricultural Sciences 52(3):645-650

Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, de Kochko A, Sarramegna-Burtet V, Job D (2015) The Amborella vacuolar processing enzyme family. Frontiers in Plant Science 6:618

Roncal J, Couderc M, Baby P, Kahn F Millan B, Meerow AW, Pintaud JC (2015) Palm diversification in two geologically contrasting regions of western Amazonia. Journal of Biogeography 42(8):1503-1513

Thomas M, Verzelen N, Barbillon P, Coomes OT, Caillon S, McKey D, Elias M, Garine E, Raimond C, Dounias E, Jarvis D, Wencélius J, Leclerc C, Labeyrie V, Cuong PH, Hue NTN, Sthapit B, Bahadur R, Barnaud A, Violon C, Arias Reyes LM, Latournerie Moreno L, de Santis P, Massol F (2015) Chapter Six - A network-based method to detect patterns of local crop biodiversity: validation at the species and infra-species levels. Advances in Ecological Research 53:259-320

Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Naqvi SA, Ludena B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Ben Salah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertoss F (2015) Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. Annals of Botany 116(5):847-847


2014

Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Cherif E, Ballardini M, Abdoulkder S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud JC (2014) In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability. Applications in Plant Sciences 2(1):1300058

Bakasso Y, Zaman-Allah M, Mariac C, Billot C, Vigouroux Y, Zongo JD and Saadou M (2014) Genetic diversity and population structure of a roselle (Hibiscus sabdariffa L.) collection in Niger. Plant Genetic Resources: characterization and utilization 12(2):207-214

Barnaud A, Billot C, Cruz JF (2014) Le fonio, un maillon essentiel de la sécurité alimentaire en Afrique de l'Ouest. Agricultures familiales, Les Dossiers d'Agropolis International 19:1628-4240

Castano F, Stauffer F, Marquinez X, Crevecoeur M, Collin M, Pintaud JC, Tregear J (2014) Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae; Arecoideae). Annals of Botany 114:1483-1495

Castillo K, Aberlenc-Bertossi F, Dubreuil-Tranchant C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud J-C (2014) In silico mining of microsatellites in coding sequences of date palm (Phoenix dactylifera L., Arecaceae) genome, characterization and transferability. Applications in Plant Sciences 2(1)

Couvreur TLP (2014) Revision of the African genus Uvariastrum (Annonaceae). Phytokeys 33:1-40

Domenech B, Asmussen-Lange CB, Baker WJ, Alapetite E, Pintaud JC, Nadot S (2014) A phylogenetic analysis of palm subtribe Archontophoenicinae (Arecaceae) based on 14 DNA regions. Bot J Linn Soc 175: 469-481

Faye A, Pintaud JC, Baker WJ, Sonke B, Couvreur TLP (2014) A plastid phylogeny of the African rattans (Ancistrophyllinae, Arecaceae). Syst Bot 39:1099-1107

Garine E, Barnaud A, Raimond C (2014) Quel pourrait être le territoire des semences des sorghos que cultivent les Duupa du Massif de Poli (Nord du Cameroun) ?. Les Cahiers d'Outre Mer 265:67-92

Idi Saidou S, Bakasso Y, Inoussa MM, Zaman-Allah M, Atta S, Barnaud A, Billot C, Saadou M (2014) Diversité agro-morphologique des accessions de fonio [Digitaria exilis (Kippist.) Stapf.] au Niger. International Journal of Biological and Chemical Sciences 8(4):1710-1729

Labeyrie V, Deu M, Barnaud A, Calatayud C, Buiron M, Wambugu P, Manel S, Glaszmann JC, Leclerc C (2014) Influence of ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in Eastern Kenya. PLOS One 9(3):e92178

Le Roux JJ, Blignaut M, Gildenhuys E, Mavengere N, Berthouly-Salazar C (2014) The molecular ecology of biological invasions: what do we know about non-additive genotypic effects and invasion success? Biological Invasion 16:997-1001

Leclerc C, Thuillet AC (2014) Biodiversité sauvage et cultivée et gestion des ressources naturelles. Agricultures familiales, Les Dossiers d'Agropolis International 19:35

Manel S, Couvreur TLP, Munoz F, Couteron P, Hardy OJ, Sonke B (2014) Characterizing the Phylogenetic Tree Community Structure of a Protected Tropical Rain Forest Area in Cameroon. PLOS One 9(6):e98920

Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Maillol V, Santoni S, Vigouroux Y, Couvreur TLP (2014) Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics andphylogeography studies. Mol Ecol Res 14(6):1103-1113

Orjuela J, Sabot F, Cheron S, Vigouroux Y, Adam H, Chrestin H, Sanni K, Lorieux M, Ghesquiere A (2014) An extensive analysis of the African rice genetic diversity through a global genotyping. Theor Appl Genet 127:2211-2223

Ouattara B, Ndir KN, Gueye MC, Diedhiou I, Barnaud A, Fonceka D, Cisse N, Akpo EL, Diouf D (2014) Genetic diversity of Jatropha curcas L. in Senegal compared with exotic accessions based on microsatellite markers. Gen Res Crop Evol 61:1039-1045

Saïdou AA,Clotault J, Couderc M, Mariac C, Devos KM, Thuillet AC, Amoukou IA, Vigouroux Y (2014) Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet. Theo Appl Genet 127(1):19-32

Saïdou AA, Thuillet AC, Couderc M, Mariac C, Vigouroux Y (2014) Association studies including genotype by environment interactions: prospects and limits. BMC Genetics 15(3)

Sow M, Ndjiondjop MN, Sido A, Mariac C Laing M, Bezancon G (2014) Genetic diversity, population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement. Gen Res Crop Evol 61:199-213

Weigend M, Luebert F, Gottschling M, Couvreur TLP Hilger HH, Miller JS (2014) From capsules to nutlets-phylogenetic relationships in the Boraginales. Cladistics 30:508-518


2013

Assoumane A, Zoubeirou AM, Rodier-Goud M, Favreau B, Bezançon G, Verhaegen D (2013) Highlighting the occurrence of tetraploidy in Acacia senegal (L.) Willd. and genetic variation patterns in its natural range revealed by DNA microsatellite markers. Tree Genetics & Genomes 9(1):93-106

Barnaud A, Kalwij J, McGeoch M, van Vuuren BJ (2013) Pattern and pathway of weed invasion: Evidence from the spatial genetic structure of Raphanus raphanistrum. Biological Invasion 15(11):2455-2465

Ballardini M, Mercuri A, Littardi C, Abbas S, Couderc M, Ludeña B, Pintaud J-C (2013) The chloroplast DNA locus psbZ-trnfM as a potential barcoding marker in Phoenix L (Arecaceae). Zookey 365:71-82

Baker WJ, Couvreur TLP (2013) Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. II: Diversification history and origin of regional assemblages. Journal of Biogeography, 40: 286-289

Baker WJ, Couvreur TLP (2013) Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography. Journal of Biogeography, 40: 274-285

Couvreur TLP, Baker WJ (2013) Tropical rain forest evolution: palms as a model group. BMC Biology 11:48

Cherif E, Zehdi S, Castillo K, Chabrillange N, Abdoulkader S, Pintaud J-C, Santoni S, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F (2013) Male-specific DNA markers provide genetic evidence of an XY chromosome system and recombination arrest, and allow to trace paternal lineages in date palm. New Phytologist 197:409-415

De Mita S, Thuillet AC, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y (2013) Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol Ecol. 22:1383-1399

Eiserhardt WL, Svenning J-C, Baker WJ, Couvreur TLP, Balslev H (2013) Dispersal and niche evolution jointly shape the geographic turnover of phylogenetic clades across continents. Scientific Reports 3: 1164

Karsten M, van Vuuren BJ, Barnaud A, Terblanche JS (2013) Population genetics of Ceratitis capitata in South Africa : implications for dispersal and pest management. Plos One, 2013, 8 (1), p. e54281

Kountche BA, Hash CT, Dodo H, Laoualy O, Sanogo MD, Timbeli A, Vigouroux Y, This D, Nijkamp R, Haussmann BIG (2013) Development of a pearl millet Striga-resistant genepool: Response to five cycles of recurrent selection under Striga-infested field conditions in West Africa. Field Crop Res 154:82-90

Newton C, Gros-Balthazard M, Ivorra S, Paradis L, Pintaud J-C, Terral J-F (2013) Phoenix dactylifera and P. sylvestris in northwestern India: a glimpse of their complex relationships. PALMS 57: 37-50

Pautasso M, Aistara G, Barnaud A, Caillon S, Clouvel P, Coomes OT, Delêtre M, Demeulenaere E, De Santis P, Döring T, Eloy L, Emperaire L, Garine E, Goldringer I, Jarvis D, Joly HI, Leclerc C, Louafi S, Martin P, Massol F, McGuire S, McKey D, Padoch C, Soler C, Thomas M, Tramontini S (2013) Seed exchange networks for agrobiodiversity conservation: A review. Agron Sustain Dev 33:151-175

Pintaud J-C, Ludeña B, Aberlenc-Bertossi F, Zehdi S, Gros-Balthazard M, Ivorra S, Terral J-F, Newton C, Tengberg M, Abdoulkader S, Daher A, Nabil M, Saro-Hernandez I, Gonzalez-Perez MA, Sosa P, Santoni S, Moussouni S, Si-Dehbi F, Bouguedoura N (2013) Biogeography of the date palm (Phoenix dactylifera L., Arecaceae): insights on the origin and on the structure of modern diversity. Acta Horticulturae 994:19-38

Roncal J, Kahn F, Millán B, Couvreur T, Pintaud J-C (2013) Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae). Botanical Journal of the Linnean Society 171:120-139

Sanín MJ, Anthelme F, Pintaud J-C, Galeano G, Bernal R (2013) Juvenile resilience and adult longevity explain residual populations of the Andean wax palm Ceroxylon quindiuense after deforestation. PLOS ONE

Scarcelli N, Couderc M, Baco MN, Egah J, Vigouroux Y (2013) Clonal diversity and estimation of relative clone age: application to the study of agrobiodiversity of yam (Dioscorea rotundata). BMC Plant Biology 13:178

Zango O, Littardi C, Pintaud J-C, Rey H (2013) Comparative study of architecture and geometry of the date palm male and female inflorescences. Acta Horticulturae 994:175-191


2000-2012


Assoumane A, Mayaki AZ, Favreau B, Bezançon G, Saadou M, Verhaegen D (2012) Differentiation between two sub-species of Acacia senegal complex: Acacia senegal (L.) Willd. and Acacia dudgeoni Craib ex Holland using morphological traits and molecular markers. Genetic Resources and Crop Evolution 59(1):39-48

Barnaud A, Vignes H, Risterucci A-M, Noyer J-L, Pham J-L, Blay C, Buiron M, Vigouroux Y, Billot C (2012) Development of nuclear microsatellite loci for the fonio (Digitaria exilis), an understudied West African cereal. Am J Bot Primers Note 99:e105-7

Clotault J, Thuillet AC, Buiron M, De Mita S, Couderc M, Haussmann BIG, Mariac C, Vigouroux Y (2012) Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication. Mol Biol Evol 29:1199-1212

Terral JF, Newton C, Ivorra S, Gros-Balthazard M, Tito de Morais C, Picq S, Tengberg M, Pintaud JC (2012) Insights into the historical biogeography of the date palm (Phoenix dactylifera L.) using geometric morphometry of modern and ancient seeds. Journal of Biogeography 39(5):929-941

Montufar R, Anthelme F, Pintaud JC, Balslev H (2011)Disturbance and Resilience in Tropical American Palm Populations and Communities. Botanical review 77:426-461

Tregear JW, Rival A, Pintaud JC (2011) A family portrait: unravelling the complexities of palms. Annals of Botany 108:1387-1389

Baker WJ, Norup MV, Clarkson JJ, Couvreur TLP, Dowe JL, Lewis CE, Pintaud JC, Savolainen V, Wilmot T, Chase MW (2011) Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae). Annals of Botany 108:1417-1432

Pintaud JC, Stauffer FW (2011) A revision of the large-flowered group of Basselinia Vieill. sect. Taloua H. E. Moore & Uhl (Arecaceae). Candollea 66:147-154

Castano F, Crevecoeur M, Pintaud JC, Stauffer FW (2011) Floral structure in the neotropical palms Chelyocarpus Dammer, Cryosophila Blume and Itaya H. E. Moore (Arecaceae). Candollea 66:65-79

Ludeña B, Chabrillange N, Aberlenc-Bertossi F, Adam H, Tregear JW, Pintaud J-C (2011) Phylogenetic utility of the nuclear genes AGAMOUS1 and PHYTOCHROME B in palms (Arecaceae): an example within Bactridinae. Annals of Botany 108(8):1433-1444

Scarcelli N, Tostain S, Vigouroux Y, Luong V, Baco MN, Agbangla C, Daïnou O, Pham JL (2011) Genetic structure of farmer-managed varieties in clonally-propagated crops. Genetica 139:1055-1064

Eiserhardt WL, Pintaud J-C, Asmussen-Lange CB, Hahn WJ, Bernal R, Balslev H, Borchsenius F (2011) Phylogeny and divergence times of Bactridinae (Arecaceae, Palmae) based on plastid and nuclear DNA sequences. Taxon 60:485-498

Scarcelli N, Barnaud A, Eiserhardt W, Treier UA, Seveno M, D'anfray A, Vigouroux Y, Pintaud JC (2011) A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in Monocotyledons.PLoS ONE 6(5):e19954

Chair H, Duroy PO, Cubry P, Sinsin B, Pham JL (2011) Impact of past climatic and recent anthropogenic factors on wild yam genetic diversity. Molecular Ecology 20:1612-1623

Anthelme F, Abdoulkader A, Viane R (2011) Are ferns in arid environments underestimated? Contribution from the Saharan Mountains. J Arid Env 75:516-523

Anthelme F, Lincango J, Gully C, Duarte N, Montúfar R (2011) How anthropogenic disturbances affect the resilience of a keystone palm tree in the threatened Andean cloud forest? Biological Conservation 144: 1059-1067

Vigouroux Y, Mariac C, De Mita S, Pham JL, Gérard B, Kapran I, Sagnard F, Deu M, Chantereau J, Ali A, Ndjeunga J, Luong V, Thuillet AC, Saïdou AA, Bezançon G (2011) Selection for earlier flowering crop associated with climatic variations in the Sahel. PLoS ONE 6(5):e19563

Vigouroux Y, Barnaud A, Scarcelli N, Thuillet AC (2011) Biodiversity, evolution and adaptation of cultivated crops. CR Biol 334(5-6):450-457

Adam H, Marguerettaz M, Qadri R, Adroher B, Richaud F, Collin C, Thuillet A-C, Vigouroux Y, Laufs P, Tregear JW, Jouannic S (2011) Divergent expression patterns of miR164 and CUP-SHAPED COTYLEDON genes in palms: significance in the evolution of meristem function in angiosperms. Mol Biol Evol 28:1439-1454

Mariac C, Jehin L, Saïdou AA, Thuillet AC, Couderc M, Sire S, Jugdé H, Adam H, Bezançon G, Pham JL, Vigouroux Y (2011) Genetic basis of pearl millet population adaptation along an environmental gradient investigated by a combination of genome scan and association mapping. Mol Ecol 20:81-91

Deu M, Sagnard F, Chantereau J, Calatayud C, Vigouroux Y, Pham JL, Mariac C, Kapran I, Mamadou A, Gérard B, Ndjeunga J, Bezançon G (2010) Spatio-temporal dynamics of genetic diversity in Sorghum bicolor in Niger. Theor Appl Genet 120:1301-1313

Montufar R, Laffargue A, Pintaud J-C, Hamon S, Avallone S, Dussert S (2010) Oenocarpus bataua Mart. (Arecaceae): rediscovering a source of high oleic vegetable oil from Amazonia. Journal of the American Oil Chemists Society 87:167-172

Tang L, Zou XH, Achoundong G, Potgieter C, Second G, Zhang DY, Ge S (2010) Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments. Mol Phylogenet Evol 54:266-277

Anthelme F, Michalet R (2009) Grass-to-tree facilitation in an arid grazed environment (Aïr mountains,Sahara). Basic and Applied Ecology 10:437-446

Bezançon G, Pham JL, Deu M, Vigouroux Y, Sagnard F, Mariac C, Kapran I, Manadou A, Gérard B, Ndjeunga J et al. (2009) Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum [L.] R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between 1976 and 2003. Genetic Resources and Crop Evolution 56:223-236

Bousalem M, Durand O, Scarcelli N, Lebas BSM, Kenyon L, Marchand JL, Lefort F, Seal SE (2009) Dilemmas caused by endogenous pararetroviruses regarding the taxonomy and diagnosis of yam (Dioscorea spp.) badnaviruses: analyses to support safe germplasm movement. Arch Virol 154:297-314

Kover PX, Rowntree JK, Scarcelli N, Savriama Y, Eldridge T, Schaal BA (2009) Pleiotropic effects of environment-specific adaptation in Arabidopsis thaliana. New phytologist 183:816-825

Kover PX, Valdar W, Trakalo J, Scarcelli N, Ehrenreich IM, Purugganan MD, Durrant C, Mott R (2009) A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet 5:e1000551

Saïdou AA, Mariac C, Luong V, Pham JL, Bezançon G, Vigouroux Y (2009) Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet. Genetics 182:899-910

Scarcelli N, Kover PX (2009) Standing genetic variation in FRIGIDA mediates experimental evolution of flowering time in Arabidopsis. Mol Ecol 18:2039-2049

Alban J, Millan B, Kahn F (2008) Situación actual de la investigación etnobotánica sobre palmeras de Perú. Rev Peru Biol 15, supl 1:133-142

Allinne C, Mariac C, Vigouroux Y, Bezançon G, Couturon E, Moussa D, Tidjani M, Pham JL, Robert T (2008) Role of seed flow on the pattern and dynamics of pearl millet (Pennisetum glaucum [L.] R. Br.) genetic diversity assessed by AFLP markers: a study in south-western Niger. Genetica 133:167-178

Anthelme F, Abdoukader A, Besnard, G (2008) Distribution, shape and clonal growth of the rare endemic tree Olea europaea subsp. laperrinei (Oleaceae) in the Saharan mountains of Niger. Plant Ecology 198:73-87

Anthelme F, Waziri Mato M, Maley J (2008) Elevation and local refuges ensure persistence of mountain specific vegetation in the Nigerien Sahara. Journal of Arid Environments 72:2232-2242

Baco MN, Biaou G, Pham JL, Lescure JP (2008) Facteurs géographiques et sociaux de la diversité des ignames cultivées au Nord Bénin. Cahiers Agricultures 17:172-177

Barry MB, Diagne A, Pham JL, Ahmadi N (2008) Evolution récente de la diversité génétique des riz cultivés (Oryza sativa et O. glaberrima) en Guinée. Cahiers Agricultures 17:122-127

Barry MB, Diagne A, Sogbossi MJ, Pham JL, Diawara S Ahmadi N (2008) Recent changes in varietal diversity of rice in Guinea. Plant Genetic Resources: Characterization and Utilization 7:63-71

Barry MB, Pham JL, Béavogui S, Ghesquièr, A Ahmadi N (2008) Diachronic (1979-2003) analysis of rice genetic diversity in Guinea did not reveal genetic erosion. Genetic Resources and Crop Evolution 55:723-733

Brooker R, Maestre FT, Callaway RM, Lortie C, Kunstler G, Liancourt P, Tielboerger K, Travis JMJ, Anthelme F et al. (2008) Facilitation in plant communities: the past, the present, and the future. Journal of Ecology 96:18-34

Cheban SA, Rejo-Fienena F, Tostain S (2008) Étude ethnobotanique des ignames (Dioscorea sp.) dans la forêt Mikea et le couloir d'Antseva (sud-ouest de Madagascar). Malagasy Nature

Deu M, Sagnard F, Chantereau J, Calatayud C, Herault D, Mariac C, Pham JL, Vigouroux Y, Kapran I, Traore P et al. (2008) Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theoretical and Applied Genetics 116:903-913

Galeano G, Sanín MJ, Mejía K, Pintaud JC Millán B (2008) Novelties in the genus Ceroxylon (Arecaceae) from Peru, with description of a new species. Rev Peru Biol 15, supl 1:65-72

Kahn F (2008) The genus Astrocaryum. Rev Peru Biol 15, supl 1:31-48

Kahn F Arana C (2008) Las palmeras en el marco de la investigación para el desarrollo en América del Sur. Rev Peru Biol 15, supl 1:5-6

Kahn F Luxereau A (2008) Doum palm habit and leaf collecting practices in Niger. Palms 52:23-29

Montúfar R, Pintaud JC (2008) Taxonomic status of Oenocarpus bataua (Euterpeae, Arecaceae) inferred from plastid sequences. Revista Peruana de Biología, 15, supl 1:73-78

Oumar I, Mariac C, Pham JL, Vigouroux Y (2008) Phylogeny and origin of pearl millet (Pennisetum glaucum [L.] R. Br) as revealed by microsatellite loci. Theoretical and Applied Genetics 117:489-497

Pintaud JC, Baker WJ (2008) A revision of the New Caledonian palm genera. Kew Bulletin 63:61-73

Pintaud JC, Galeano G, Balslev H, Bernal R, Borchsenius F, Ferreira E, Granville J-J, Mejia K, Millan B, Moraes M, Noblick L, Stauffer FW, Kahn F (2008) Las palmeras de América del Sur: diversidad, distribución e historia evolutiva. Rev Peru Biol 15, supl 1:7-29

Pintaud JC, Millan B, Kahn F (2008) The genus Hexopetion. Rev Peru Biol 15, supl 1:49-54

Pintaud JC (2008) An overview of the taxonomy of Attalea (Arecaceae). Revista Peruana de Biología, 15, supl 1:55-63

Pintaud JC, Anthelme F (2008) Ceroxylon echinulatum in an agroforestry system of northern Peru. Palms 52:96-102

Pintaud JC, Ludeña B (2008) Andean palms in Ecuadorean cities. Palms 52:165-173

Pintaud JC, Couvreur TLP, Lara C, Ludena B, Pham JL (2008) Reciprocal introgression between wild and cultivated compartments of the peach palm (Bactris gasipaes, Arecaceae) in Western Ecuador. In Maxted, N., Ford-Lloyd, B., Kell, S., Iriondo, J., Dulloo, E. and Turok, J. (eds.), Crop Wild relative Conservation and Use. CAB International, UK, pp. 296-308

Sagnard F, Barnaud A, Deu M, Barro C, Luce C, Billot C, Rami JF, Bouchet S, Dembele D, Pomies V, Calatayud C, Rivallan R, Joly H, Brocke KV, Toure A, Chantereau J, Bezançon G, Vaksmann M (2008) Multi-scale analysis of sorghum genetic diversity : understanding the evolutionary processes for in situ conservation. Cahiers Agricultures 17:114-121

Second G, Berthaud J (2008) Sélection empirique et amélioration des plantes. In: Aux origines des plantes, tome 2: Des plantes et des hommes, Chap. 10: 260-275. Hallé, F. (dir.); Lieutaghi, P. (dir.) - Fayard, Paris

Second G, Rouhan G (2008) Human-mediated emergence as a weed and invasive radiation in the wild of the CD genome allotetraploid rice species (Oryza, Poaceae) in the Neotropics. Plos ONE 3:e2613

Scarcelli N, Tostain S, Baco MN, Agbangla C, Daïnou O, Vigouroux Y, Pham JL (2008) Does agriculture conflict with in-situ conservation? A case study on the use of wild relatives by yam farmers in Benin. In : Maxted N, Ford-Lloyd BV, Kell SP, Iriondo JM, Dulloo ME et Turok J (eds) Crop Wild Relative Conservation and Use. CAB International, UK, pp331-339

Tostain S, Chair H, Scarcelli N, Noyer JL, Agbangla C, Marchand JL, Pham JL (2008) Diversité, origine et dynamique évolutive des ignames cultivées Dioscorea rotundata Poir. au Bénin. In : Colloque National du BRG, Un dialogue pour la diversité génétique. Paris : BRG, 2005, p. 465-482

Thuillet AC, Roumet P, Bordat A, Tollon C, Poux G, Santoni S, David J (2008) Déperdition ancienne et restauration moderne de la diversité génétique du blé. Les Actes du BRG, 7

Thuillet AC, Tenaillon MI, Anderson LK, Mitchell SE, Kresovich S, Stack SM, Gaut B, Doebley J (2008) A weak effect of background selection on trinucleotide microsatellites in maize. Journal of Heredity 99:45-55

Vargas VH, Pintaud JC (2008) Characterization of a parapatric contact zone between Astrocaryum macrocalyx and Astrocaryum urostachys at the boundary of the Marañón-Pastaza flood plain and the Iquitos arch. Revista Peruana de Biología, 15, supl 1:79-83

Vegas C, Millan B, Pintaud JC, Kahn F (2008) Descripción de la anatomía del fruto en especies peruanas de Astrocaryum (Arecaceae). Rev Peru Biol 15, supl 1:85-96

Vigouroux Y, Glaubitz JC, Matsuoka Y, Goodman MM, Sanchez GJ, Doebley J (2008) Population structure and gene diversity of New World maize races assessed by DNA Microsatellites. American Journal of Botany 95:1240-1253

Zhao Q, Thuillet AC, Uhlmann NK, Weber A, Rafalski JA, Allen SM, Tingey S, Doebley J (2008) The role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression. Genetics 178:2133-2143

Zhou HF, Zheng XM, Wei RX, Second G, Vaughan D, Ge S (2008) Contrasting population genetic structure and gene flow between Oryza rufipogon and Oryza nivara. Theoretical and Applied Genetics 117 1181-1189

Anthelme F, Michalet R, Saadou M (2007) Positive associations involving the tussock grass Panicum turgidum Forssk in the Air-Tenere Reserve. Journal of Arid Environments 68:348-362

Anthelme F, Villaret JC, Brun JJ (2007) Shrub encroachment in the subalpine Alps gives rise to community convergence on a regional scale. Journal of Vegetation Science 18:355-362

Badstue LB, Bellon MR, Berthaud J, Juárez X, Rosas IM, Solano AM, Ramírez A (2007) Examining the role of collective action in an informal seed system: a case study from the central valleys of Oaxaca, Mexico. Human Ecology 34:249-273

Badstue L, Bellon M, Berthaud J, Ramírez A, Flores D, Juárez X (2007) The dynamics of farmers' maize seed supply practices in the Central Valleys of Oaxaca, Mexico. World development 35:1579-1593

Barry M, Pham JL, Courtois B, Billot C, Ahmadi N (2007) Rice genetic diversity of the two cultivated rice species (O. sativa & O. glaberrima) in Maritime Guinea. Evidence for interspecific recombination. Euphytica 154:127-137

Barry MB, Pham JL, Courtois B, Billot C, Ahmadi N (2007) Rice genetic diversity at the farm and village levels and genetic structure of local varieties reveal need for in situ conservation. Genetic Resources and Crop Evolution 54:1675-1690

Barry M, Pham JL, Noyer J, Courtois B, Billot C, Ahmadi N (2007) Implications for in situ genetic resource conservation from the ecogeographical distribution of rice genetic diversity in Maritime Guinea. Plant Genetic Resources: Characterization and Utilization 5:45-54

Besnard G, Christin PA, Baali-Cherif D, Bouguedoura N, Anthelme F (2007) Spatial genetic structure in the Laperrine's olive (Olea europaea subsp. laperrinei), a long-living tree from the central Saharan mountains. Heredity 99:649-657

Couvreur T, Hahn W, de Granville J, Pham JL, Ludeña B, Pintaud JC (2007) Phylogenetic relationships of the cultivated Neotropical palm Bactris gasipaes (Arecaceae) with its wild relatives inferred from chloroplast and nuclear DNA polymorphisms. Systematic Botany 32:519-530

Darmency H, Vigouroux Y, Gestat de Garambe T, Richard-Molard M, Muchembled C (2007) Transgene escape in sugar beet production fields: data from six years farm scale monitoring. Environmental Biosafety Research 6:197-206

Kahn F (2007) Ciencias empíricas, ética y desarrollo sostenible. Rev Peru Biol 13:151-154

Ledru P, Salatino MLF, Ceccantini G, Salatinono A, Pinheiro F, Pintaud JC (2007) Regional assessment of the impact of climatic change on the distribution of a tropical conifer in the lowlands of South America. Diversity and Distributions 13:761-771

Montufar R, Mariac C, Pham JL, Pintaud JC (2007) Isolation of 23 polymorphic microsatellite loci in the neotropical palm Oenocarpus bataua Martius (Arecaceae). Molecular Ecology Notes 7:75-78

Tostain S, Agbangla C, Scarcelli N, Mariac C, Daïnou O, Berthaud J, Pham JL (2007) Genetic diversity analysis of yam cultivars (Dioscorea rotundata Poir.) in Benin using SSR markers. Plant Genetic Resources: Characterization and Utilization 5: 71-81

Scarcelli N, Cheverud JM, Schaal BA, Kover PX (2007) Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus. PNAS 104:16986-16991

Asmussen CB, Dransfield J, Deickmann V, Barfod, AS, Pintaud JC, Baker WJ (2006) A new subfamily classification of the palm family (Arecaceae): evidence from plastid DNA phylogeny. Botanical Journal of the Linnean Society 151:15-38

Bellon MR, Berthaud J (2006) Traditional Mexican Agricultural Systems and the Potential Impacts of Transgenic Varieties on Maize Diversity. Agriculture and Human Values 23:3-14

Couvreur T, Billotte N, Risterucci AM, Lara C, Vigouroux Y, Ludena B, Pham JL, Pintaud JC (2006) Close genetic proximity between cultivated and wild Bactris gasipaes Kunth revealed by microsatellite markers in Western Ecuador. Genetic Resources and Crop Evolution 53:1361-1373

Haussmann B, Boubacar A, Boureima SS, Vigouroux Y (2006) Multiplication and preliminary characterization of West and Central African pearl millet landraces. International Sorghum and Millets Newsletter. 47:110-112

Henderson SA, Billotte N, Pintaud JC (2006) Genetic isolation of Cape Verde Island Phoenix atlantica (Arecaceae) revealed by microsatellite markers. Conservation Genetics 7:213-223

Mariac C, Luong V, Kapran I, Mamadou A, Sagnard F, Deu M, Chantereau J, Gérard B, Ndjeunga J, Bezancon G, Pham JL, Vigouroux Y (2006) Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers. Theoretical and Applied Genetics 114:49-58

Mariac C, Robert T, Alline C, Remigereau MS, Luxereau A, Tidjabi M, Seyni O, Bezancon G, Pham JL, Sarr A (2006) Genetic diversity and gene flow among pearl millet crop/weed complex: a case study. Theoretical and Applied Genetics 113:1003-1014

Montufar R, Pintaud JC (2006) Variation in species composition, abundance, and microhabitat preferences among western Amazonian terra firme palm communities. Botanical Journal of the Linnean Society 151:127-140

Pintaud JC (2006) The impact of forest disturbance on the palms of New Caledonia. Palms 50:123-135

Scarcelli N, Tostain S, Mariac C, Agbangla C, Daïnou O, Berthaud J, Pham JL (2006) Genetic nature of spontaneous yams (Dioscorea sp.) domesticated by farmers in Benin (West Africa). Genetic Resources and Crop Evolution 53:121-130

Scarcelli N, Tostain S, Vigouroux Y, Agbangla C, Daïnou O, Pham JL (2006) Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin. Molecular Ecology 15:2421-2431

Tostain S, Scarcelli N, Brottier P, Marchand JL, Pham JL, Noyer JL (2006) Development of DNA microsatellite markers in tropical yam (Dioscorea sp.). Molecular Ecology Notes 6:173-175

Zehdi S, Pintaud JC, Billotte N, Salem A, Sakka H, Rhouma A, Marrakchi M Triffi M (2006) Use of SSR markers to provide an identification key for date-palm varieties (Phoenix dactylifera L.). Plant Genetic Resources Newsletter 145:11-18

Bataillon T, Chantret N, Cenci A, Gautier MF, Joudrier P, Haudry, Muller MH, Poncet C, Prosperi JM, Ronfort J, Roumet P, Santoni S, Thuillet AC, David J (2005) Impacts d'événements démographiques et sélectifs sur la diversité des plantes cultivées : apports de l'analyse du polymorphisme allié à la théorie de la coalescence. Les Actes du BRG 6, 243-257

Bezancon G, Diallo S (2005) Oryza glaberrima. In: Plant Resources of Tropical Africa (PROTA book on cereals and pulses) Databank. Wageningen UR, Netherland

Bellon MR, Berthaud J (2005) Maize diversity, gene flow and transgenes in Mexico. In M CARMEN DE VICENTE (ed); Topical Reviews in Agricultural Biodiversity: Issues on Gene Flow and Germplasm Management. Rome: IPGRI, pp. 45-51

Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, Buckler ES (2005) Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant Journal 44:1054-1064

Fukunaga K, Hill J, Vigouroux Y, Matsuoka Y, Sanchez J, Liu KJ, Buckler ES, Doebley J (2005) Genetic diversity and population structure of teosinte. Genetics 169:2241-2254

Ludeña B, Escobar JC, Pintaud JC (2005) Elementos Alu en el análisis filogenético molecular del infraorden Platyrrhini, Primates. Revista Ecuatoriana de Medicina y Ciencias Biológicas 27:47-51

Ouennoughi M, Kahn F (2005) Behind the date palm in New Caledonia. Palms 49(2): 67-72

Pintaud JC (2005) La Garance Voyageuse 69: 21-26

Pintaud JC (2005) Rhopalostylis baueri on Norfolk Island. Palms 49:92-96

Pintaud JC (2005) A journey along the Rio Napo. Palms 49:85-91

Scarcelli N, Daïnou O, Agbangla C, Tostain S, Pham JL (2005) Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n = 40). Theoretical and Applied Genetics 111:226-232

Second G, Glaszmann JC, Panaud O(2005) Unravelling the origins and genetic diversity of cultivated rice. In: France and the CGIAR: delivering scientific results for agricultural development, pp 11-14

Serratos-Hernandez JA, Islas-Gutierrez F, Buendia-Rodriguez E, Berthaud J (2005) Gene flow scenarios withtransgenic maize in Mexico. Environmental Biosafety Research, 3:149-157

Thuillet AC, Bataillon T, Poirier S, Santoni S, David JL (2005) Estimation of long-term effective population sizes through the history of durum wheat using microsatellite data. Genetics 169:1589-1599

Vigouroux Y, Mitchell S, Matsuoka Y, Hamblin M, Kresovich S, Smith S, Jaqueth J, Smith O, Doebley J (2005) An analysis of genetic diversity across the maize genome using microsatellites. Genetics 169:1617-1630

Wang H, Nussbaum-Wagler T, Li B, Zhao Q, Vigouroux Y, Faller M, Bomblies K, Lukens L, Doebley JF (2005) The origin of the naked grains of maize. Nature 436:714-719

Whittier D, Pintaud JC, Braggins J (2005) The gametophyte of Lycopodium deuterodensum: type I or type II. American Fern Journal 95:22-29

Billotte N, Couvreur T, Marseillac N, Brottier P, Perthuis B, Vallejo M, Noyer JL, Jacquemoud-Collet JP, Risterucci AM, Pintaud JC (2004) A new set of microsatellite markers for the peach palm (Bactris gasipaes Kunth); characterization and across-taxa utility within the tribe Cocoeae. Mol Ecol Notes 4:580-582

Billotte N, Marseillac N, Brottier P, Noyer JL, Jacquemoud-Collet JP, Moreau C, Couvreur T, Chevallier MH, Pintaud JC, Risterucci AM (2004) Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.): characterization and utility across the genus Phoenix and in other palm genera. Mol Ecol Notes 4:256-258

Bellon MR, Berthaud J (2004) Transgenic maize and the evolution of landrace diversity in Mexico. The importance of farmers' behavior. Plant Physiol 134:883-888

Pressoir G, Berthaud J (2004) Population structure and strong divergent selection shape phenotypic diversification in maize landraces. Heredity 92:95-101

Pressoir G, Berthaud J (2004) Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico. Heredity 92:88-94

Serratos-Hernández JA, Islas-Gutiérrez F, Buendía-Rodríguez E, Berthaud J (2004) Gene flow scenarios with transgenic maize in Mexico. Environ Biosafety Res 3:149-157

Thuillet AC, Bataillon T, Sourdille P, David JL (2004) Factors affecting polymorphism at microsatellite loci in bread wheat [ Triticum aestivum (L.) Thell]: effects of mutation processes and physical distance from the centromere. Theor Appl Genet. 108:368-377

Zehdi S, Trifi M, Billotte N, Marrakchi M, Pintaud JC (2004) Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymprohism. Hereditas 141:278-387

Kahn F, Gluchy D (2002) Variation in morphology of the pistillate flowers of Astrocaryum urostachys (Palmae) in Amazonian Ecuador. Nordic J of Bot 22:353-360

Vigouroux Y, Matsuoka Y, Doebley J (2003) Directional evolution for microsatellite size in maize. Mol Biol Evol 20:1480-1483

Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez G J, Buckler E, Doebley J (2002) A single domestication for maize shown by multilocus microsatellite genotyping. PNAS 99:6080-6084

Thuillet AC, Bru D, David J, Roumet P, Santoni S, Sourdille P, Bataillon T (2002) Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp durum desf. Mol Biol Evol 19:122-125

Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WD, Smith JS, Doebley J (2002) Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol 19:1251-1260

Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, Doebley J (2002) Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. PNAS 99:9650-9655

Renno JF, Mariac C, Poteaux C, Bezançon G, Lumaret R (2001) Haplotype variation of cpDNA in the agamic grass complex Pennisetum section Brevivalvula (Poaceae). Heredity 86:537-544

Chapin MH, Essig FB, Pintaud JC (2001) The morphology and histology of the fruits of Pelagodoxa (Arecaceae): Taxonomic and biogeographical implications. Systematic Bot 26:779-785

Pintaud JC, Jaffré T, Puig H (2001) Chorology of New Caledonian palms and possible evidence of Pleistocene rain forest refugia. C R Acad Sci III 324:453-463

Vigouroux Y, Couvet D (2000) The hierarchical island model revisited. Genet Sel Evol 32:395-402

Mariac C, Trouslot P, Poteaux C, Bezançon G, Renno JF (2000) Chloroplast DNA extraction from herbaceous and woody plants for direct restriction fragment length polymorphism analysis. Biotechniques 28:110-113

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