2020
Campbell M, Grondin A, Walia H, Morota G (2020) Leveraging genome-enabled growth models to study shoot growth responses to water deficit in rice (Oryza sativa). Journal of Experimental Botany, in press.
de la Fuente Cantó C, Simonin M, King E, Moulin L, Bennett MJ, Castrillo G, Laplaze L (2020) An extended root phenotype: the rhizosphere, its formation and impacts on plant fitness. The Plant Journal, in press.
Djighaly PI, Ngom D, Diagne N, Fall D, Ngom M, Diouf D, Hocher V, Laplaze L, Champion A, Farrant JM, Svistoonoff S (2020) Effect of Casuarina plantations inoculated with arbuscular mycorrhizal fungi and Frankia on the diversity of herbaceous vegetation in saline environments in Senegal. Diversity, in press.
Ibtihaj El M, Fahr M, Abourouh M, Bendaou N, Triqui Zine-El A, Guedira A, Bogusz D, Laplaze L, Smouni A (2020) Zinc, lead, and cadmium tolerance and accumulation in Cistus libanotis, Cistus albidus, and Cistus salviifolius: Perspectives on phytoremediation. Remediation 30:73-80
Larrieu A, Nguyen TH, Champion A (2020) Use of fluorescent reporters to analyse dynamic and spatial responses to mechanical wounding. Methods in Molecular Biology 2085:161-168
Nguyen TH, Mai HTT, Moukouanga D, Lebrun M, Bellafiore S, Champion A (2020) A CRISPR/Cas9-mediated gene editing of the Jasmonate biosynthesis OsAOC gene in rice. Methods in Molecular Biology 2085:199-209
Ngom M, Cissoko M, Gray K, Hocher V, Laplaze L, Sy MO, Svistoonoff S, Champion A (2020) Establishment of actinorhizal symbiosis in response to Ethylene, Salicylic Acid and Jasmonate. Methods in Molecular Biology 2085:117-130
2019
To HTM, Nguyen HT, Dang NTM, Nguyen NH, Bui TX, Lavarenne J, Phung NTP, Gantet P, Lebrun M, Bellafiore S, Champion A (2019) Unraveling the genetic elements involved in shoot and root growth regulation by Jasmonate in rice using a genome-wide association study. Rice 12:69
Nguyen TH, To HTM, Lebrun M, Bellafiore S, Champion A (2019) Jasmonates-the master regulator of rice development, adaptation and defense. Plants 9:8
Gonin M, Bergougnoux V, Nguyen T, Gantet P, Champion A (2019) What makes adventitious roots? Plants 8:e240
Hoang TG, Gantet P, Nguyen HK, Phung PTN, Ha TL, Nguyen TT, Lebrun M, Courtois B, Pham XH (2019) Genome-wide association mapping of leaf mass traits in a Vietnamese rice landrace panel. PLOS One 14:e0219274
Dubrovsky JG, Fukaki H, Laplaze L, Laskowski M (2019) Editorial: Root branching: From lateral primordium initiation and morphogenesis to function. Frontiers in Plant Science 10:1462
Banda J, Bellande K, von Wangenheim D, Goh T, Guyomarc'h S, Laplaze L, Bennet MJ (2019) Lateral root formation in Arabidopsis: A well-ordered LRexit. Trends in Plant Science 1:14
Faye A, Sine B, Chopart JL, Grondin A, Lucas M, Diedhiou AG, Gantet P, Cournac L, Min D, Audebert A, Kane A, Laplaze L (2019) Development of a model estimating root length density from root impacts on a soil profile in pearl millet (Pennisetum glaucum (L.) R. Br). Application to measure root system response to water stress in field conditions. Plos One 14:e0214182
Ghodhbane-Gtari F, Nouioui I, Hezbri K, Lundstedt E, D'Angelo T, McNutt Z, Laplaze L, Gherbi H, Vaissayre V, Svistoonoff S, Ahmed HB, Boudabous A, Tisa LS (2019) The plant-growth-promoting actinobacteria of the genus Nocardia induces root nodule formation in Casuarina glauca. Antonie van Leeuwenhoek 112:75
Hoang TG, Dinh VL, Nguyen TT, Ta KN, Gathignol F, Mai DC, Jouannic S, Tran DK, Khuat HT, Do NV, Lebrun M, Courtois B, Gantet P (2019) Genome-wide association study of a panel of Vietnamese rice landraces reveals new QTLs for tolerance to water deficit during the vegetative phase. Rice 12:4
Lavarenne J, Gonin M, Guyomarc'h S, Rouster J, Champion A, Sallaud C, Laplaze L, Gantet P, Lucas M (2019) Inference of the gene regulatory network acting downstream of CROWN ROOTLESS 1 in rice reveals a regulatory cascade linking genes involved in auxin signaling, crown root initiation and root meristem specification and maintenance. The Plant Journal, 100:954
Nguyen LK, Grondin A, Courtois B, Gantet P (2019) Next-generation sequencing accelerates crop gene discovery. Trends in Plant Science 24:263
Trinh DC, Lavenus J, Goh T, Boutté Y, Drogue Q, Vaissayre V, Tellier F, Lucas M, Voß U, Gantet P, Faure JD, Dussert S, Fukaki H, Bennett MJ, Laplaze L, Guyomarc'h S (2019) PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation. Proceedings of the National Academy of Sciences 116:201906300
2018
Djighaly PI, Diagne N, Ngom M, Ngom D, Hocher V, Fall D, Diouf D, Laplaze L, Svistoonoff S, Champion A (2018) Selection of arbuscular mycorrhizal fungal strains to improve Casuarina esquisetifolia L. and Casuarina glauca Sieb. tolerance to salinity. Annals of Forest Science 75:72
Trinh DC, Laplaze L, Guyomarc'h S (2018) Lateral root development: building a meristem de novo. Annual Plant Review 1:1
Chu TTH, Hoang TG, Trinh DC, Bureau C, Meynard D, Vernet A, Ingouf M, Do NV, Perin C, Guiderdoni E, Gantet P, Maurel C, Luu TD (2018) Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice. Rice 11:23
Cissoko M, Hocher V, Gherbi H, Gully D, Carré-Mlouka A, Sane S, Pignoky S, Champion A, Ngom M, Pujic P, Fournier P, Gtari M, Swanson E, Pesce C, Tisa LS, Sy MO, Svistoonoff1 S (2018) Actinorhizal signaling molecules: Frankia root hair deforming factor shares properties with NIN inducing factor. Frontiers in Plant Science 9:1494
Debieu M, Sine B, Passot S, Grondin A, Akata E, Gangashetty P, Vadez V, Gantet P, Fonceka D, Cournac L, Hash CT, Kane NA, Vigouroux Y, Laplaze L (2018) Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet. PLoS ONE 13:10
Djighaly PI, Diagne N, Ngom M, Ngom D, Hocher V, Fall D, Diouf D, Laplaze L, Svistoonoff S, Champion A (2018) Selection of arbuscular mycorrhizal fungal strains to improve Casuarina equisetifolia L. and Casuarinaglauca Sieb. tolerance to salinity. Annals of Forest Science 75:3
Grondin A, Dixit S, Torres R, Venkateshwarlu C, Rogers E, Mitchell-Olds T, Benfey, PN, Kumar A, Henry A (2018) Physiological mechanisms contributing to QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought. Rice 11:43
Hajjarpoor A, Soltani A, Zeinali E, Kashiri H, Aynehband A, Vadez V (2018) Using boundary line analysis to assess the on-farm crop yield gap of wheat. Field Crops Research 225:64
Hajjarpoor A, Vadez V, Soltani A, Gaur P, Whitbread A, Babu DS, Gumma MK, Diancoumba M, Kholova J (2018) Characterization of the main chickpea cropping systems in India using a yield gap analysis approach. Field Crops Research 223:93
Hoang TG, Gathignol F, Le TD, Nguyen TT, Gantet P, Pham XH, Lebrun M (2018) Screening of salt tolerance potential of a panel of Vietnamese rice landraces at seedling stage. Journal of Vietnam Agricultural Science and Technology 1:27
Laplaze L, Sparvoli F, Masmoudi K, Hash CT (2018) Editorial: Harvesting plant and microbial biodiversity for sustainably enhanced food security. Front. Plant Sci. 9:42
Lavarenne J, Guyomarc'h S, Sallaud C, Gantet P, Lucas M (2018) The spring of systems biology-driven breeding. TRENDS in Plant Science 23:706
Mbodj D, Effa-Effa B, Kane A, Manneh B, Gantet P, Laplaze L, Diedhiou AG, Grondin A (2018) Arbuscular mycorrhizal symbiosis in rice: Establishment, environmental control and impact on plant growth and resistance to abiotic stresses. Rhizosphere 8:12
Passot S, Moreno-Ortega B, Moukouanga D, Balsera C, Guyomarc'h S,Lucas M, Lobet G, Laplaze L, Muller B, Guédon Y (2018) A new phenotyping pipeline reveals three types of lateral roots and a random branching pattern in two cereals. Plant Physiol. 177:896
Reynolds M, Kropff M, Crossa J, Koo J, Kruseman G, Molero Milan A, Rutkoski J, Schulthess U, Singh B, Sonder K, Tonnang H, Vadez V (2018) Role of Modelling in international crop research: Overview and some case studies. Agronomy 8:291
Sivasakthi K, Thudi M, Tharanya M, Kale SM, Kholova J, Halime MH, Jaganathan D, Baddam R, Thirunalasundar T, Gaur PM, Varshney RK, Vadez V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology 18:29
Ta KN, Khong NG, Ha TL, Nguyen DT, Mai DM, Hoang TG, Phung TPN, Bourrie I, Courtois B, Tran TTH, Dinh BY, La TN, Do NV, Lebrun M, Gantet P, Jouannic S (2018) A Genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits. BMC Plant Biology 18:282
Tharanya M, Kholova J, Sivasakthi K, Seghal D, Hash CT, Raj B, Srivastava RK, Baddam R, Thirunalasundari T, Yadav R, Vadez V (2018) Quantitative trait loci (QTLs) for water use and crop production traits co‑locate with major QTL for tolerance to water deficit in a fine mapping population of pearl millet (Pennisetum glaucum L.R.Br.). Theoretical and Applied Genetics 131:1509
Tharanya M, Sivasakthi K, Barzana G, Thirunalasundari T, Vadez V (2018) Pearl millet (Pennisetum glaucum) contrasting for the transpiration response to vapour pressure deficit also differ in their dependence on the symplastic and apoplastic water transport pathways. Functional Plant Biology 45:719
von Wettberg EJB, Chang PL, Basdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Sani SGAS, Getahun T, Vance L, Bergmann E, Lindsay D, Mamo BE, Warschefsky EJ, Dacosta-Calheiros E, Marques E, Yilmaz MA, Cakmak A, Rose J, Migneault A, Krieg CP, Saylak S, Temel H, Friesen ML, Siler E, Akhmetov Z, Ozcelik H, Kholova J, Can C, Gaur PM, Yildirim Mm Sharma HC, Vadez V, Tesfaye K, Woldemedhin AF, Tar'an B, Aydogan A, Bukun B, Penmetsa RV, Berger J, Kahraman A, Nuzhdin SV, Cook DR (2018) Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications 9:649
2017
CacasJL, PréM, PizotM, CissokoM, DiedhiouI, JalloulA, DoumasP, Nicole N, Champion A (2017) GhERF-IIb3 regulates accumulation of jasmonate and leads to enhanced cotton resistance to blight disease. Molecular Plant Pathology 18:825
Debieu M, Kanfany G, Laplaze L (2017) Pearl millet genome: Lessons from a tough crop. Trends in Plant Science 22:911
Makhzoum A, Malik S, Yousefzadi M, Gantet P, Tremouillaux-Guiller (2017) Strigolactones biology: genes, functional genomics, epigenetics and applications. Critical Reviews in Biotechnology 37:151
Medina S, Gupta SK, Vadez V (2017) Transpiration Response and Growth in pearl millet parental lines and hybrids bred for contrasting rainfall environments. Frontiers in Plant Science 8:1846
Ndour A, Vadez V, Pradal C, Lucas M (2017) Virtual plants need water too: Functional-structural root system models in the context of drought tolerance breeding. Frontiers in Plant Sciences 8:1577
Oshone R, Ngom M, Chu F, Mansour S, Sy MO, Champion A, Tisa LS (2017) Genomic, transcriptomic, and proteomic approach towards understanding the molecular mechanisms of salt tolerance in Frankia strains isolated from Casuarina trees. BMC Genomics 18:633
Rodrigues O, Reshetnyak G, Grondin A, Saijo Y, Leonhardt N, Maurel C, Verdoucq L (2017) Aquaporins facilitate hydrogen peroxide entry into guard cells to mediate ABA- and pathogen-triggered stomatal closure. Proceedings of the National Academy of Sciences 114:9200
Sinclair TR, Devi J, Shekoofa A, Choudhary S, Sadok W, Vadez V, Riar M, Rufty T (2017) Limited-transpiration response to high vapor pressure deficit in crop species. Plant Science 260:109
Sivasakthi K, Tharanya M, Kholová J, Wangari Muriuki R, Thirunalasundari T, Vadez V (2017) Chickpea genotypes contrasting for vigor and canopy conductance also differ in their dependence on different water transport pathways. Front. Plant Sci. 8:1663
Sivasakthi K, Zaman-Allah M, Tharanya M, Kholová J, Thirunalasundari T, Vadez V (2017) Chickpea. In: Sinclair T. (eds) Water-conservation traits to increase crop yields in water-deficit environments. Pp 73-83. SpringerBriefs in Environmental Science. Springer, Cham.
Ta KN, Adam H, Staedler MY, Schoenenberger J, Harrop T, Tregear WJ, Do NV, Gantet P, Ghesquière A, Jouannic S (2017) Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated african rice. EvoDevo 8:2
Tharanya M, Kholová J, Sivasakthi K, Thirunalasundari T, Vadez V (2017) Pearl Millet. In: Sinclair T. (eds) Water-conservation traits to increase crop yields in water-deficit environments. Pp 35-45. SpringerBriefs in Environmental Science. Springer, Cham.
Vadez V, Halilou O, Hissene HM, Sibiry-Traore P, Sinclair TR, Soltani A (2017) Mapping water stress incidence and intensity, optimal plant populations, and cultivar duration for african groundnut productivity enhancement. Front. Plant Sci. 8:432
2016
Chabaud M, Gherbi H, Pirolles E, Vaissayre V, FournierJ, Moukouanga D, Franche C, Bogusz D, Tisa L, Barker D, Svistoonoff S (2016) Chitinase-resistant hydrophilic symbiotic factors secreted by Frankia activate both Ca2+ spiking and NIN gene expression in the actinorhizal plant Casuarina glauca. New Phytologist 209:86
Diedhiou AG, Mbaye FK, Mbodj D, Faye MN, Pignoly S, Ndoye I, Djaman K, Gaye S, Kane A, Laplaze L, Manneh B, Champion A (2016) Field trials reveal ecotype-specific responses to mycorrhizal inoculation in rice. PLoS ONE 11:e0167014
Goh T, Toyokura K, Wells DM, Swarup K, Yamamoto M, Mimura T, Weijers D, Fukaki H, Laplaze L,Bennett MJ, Guyomarc'h S (2016) Quiescent center initiation in the Arabidopsis lateral root primordia is dependent on the SCARECROW transcription factor. Development 143:3363
Hanin M, Ebel C, Ngom M, Laplaze L, Masmoudi M (2016) New insights on plant salt tolerance mechanisms and their potential use for breeding. Front. Plant Sci. 7:1787
Lavenus J, Guyomarc’h S, Laplaze L (2016) PIN transcriptional regulation shapes root system architecture. Trends in Plant Sciences 21:175
Ngom M, Gray K, Diagne N, Oshone R, Fardoux J, Gherbi H, Hocher V, Svistoonoff S, Laplaze L, Tisa LS, Sy MO, Champion A (2016) Symbiotic performance of diverse Frankia strains on salt-stressed Casuarina glauca and Casuarina equisetifolia plants. Frontiers in Plant Science 7:1331
Ngom M, Oshone R, Diagne N, Cissoko M, Svistoonoff S, Tisa L, Laplaze L, Sy MO, Champion A (2016) Tolerance to environmental stress by the nitrogen-fixing actinobacterium Frankia and its role in actinorhizal plants adaptation. Symbiosis 70:17
Ngom M, Oshone R, Hurst S, Abebe-Akele F, Simpson S, Morris K, Sy MO, Champion A, Thomas W, Tisa LS (2016) Permanent draft genome sequence for Frankia sp. strain CeD, a nitrogen-fixing Actinobacterium isolated from the root nodules of Casuarina equistifolia grown in Senegal. Genome Announcement 4:e00265-16
Oshone R, Ngom M, Abebe-Akele F, Simpson S, Morris K, Sy MO, Champion A, Thomas W, Tisa LS (2016) Permanent draft genome sequences for Frankia sp. strain Allo2, a salt-tolerant nitrogen-fixing Actinobacterium isolated from the root nodules of Allocasuarina. Genome Announcement 4:e00388-16
Passot S, Gnacko F, Moukouanga D,Lucas M,Guyomarc'h S, Moreno Ortega B, Atkinson J, Niang M, Bennett M, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Front. Plant Sci. 7:829
Phung NTP, Mai CD, Hoang GT, Truong HTM, Lavarenne J, Gonin M, Nguyen KL, Ha TT, Do VN, Gantet P, Courtois B (2016) Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam. BMC Plant Biology 16:64
Poonlaphdecha J, Gantet P, Maraval I, Sauvage FX, Menut C, Morere A, Boulanger R, Wust M, Gunata Z (2016) Biosynthesis of 2-acetyl-1-pyrroline in rice calli cultures: Demonstration of 1-pyrroline as a limiting substrate. Food Chemistry 197:965
Selvakesavan RK, Dhanya NN, Thushara P, Abraham SM, Jayaraj RSC, Balasubramanian A, Deeparaj B, Sudha S, Sowmiya Rani KS, Bachpai VKW, Ganesh D, Diagne N, Laplaze L, Gherbi H, Svistoonoff S, Hocher V, Franche C, Bogusz D, Nambiar-Veetil M (2016) Intraspecies variation in sodium partitioning, potassium and proline accumulation under salt stress in Casuarina equisetifolia Forst. Symbiosis 70:117
Ta KN, Sabot F, Adam H, Vigouroux Y, De Mita S, Ghesquière A, Do, NV, Gantet P, Jouannic S (2016) miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species. Rice 9:10
2015
Bellafiore S, Jougla C, Chapuis E, Besnard G, Suong M, Nguyen VP, De Waele D, Gantet P, Ngo TX (2015) Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam. C. R. Biologies 338:471
Champion A, Lucas M, Tromas A, Vaissayre V, Crabos A, Diedhiou I, Prodjinoto H, Moukouanga D, Pirolles E, Cissoko M, Bonneau J, Gherbi H, Franche C, Hocher V, Svistoonoff S, Laplaze L (2015) Inhibition of auxin signaling in Frankia-infected cells in Casuarina glaucanodules leads to increased nodulation. Plant Physiology 167:1149
Clavijo F, Diedhiou I, Vaissayre V, Brottier L, Acolatse J, Moukouanga D, Crabos A, Auguy F, Franche C, Gherbi H,Champion A, Hocher V, Barker D, Bogusz D, Tisa LS, Svistoonoff S (2015) The Casuarina NIN gene is transcriptionally activated throughout Frankia root infection as well as in response to bacterial diffusible signals. New Phytologist 208:887
Coudert Y, Le Thi VA, Adam H, Bes M, Vignols F, Jouannic S, Guiderdoni E, Gantet P (2015) Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of post-embryonic root formation. New Phytologist 206:243
Fahr M, Laplaze L, El Mzibri M, Doumas P, Bendaou N, Hocher V, Bogusz D, Smouni A (2015) Lead tolerance and accumulation in metallicolous and non-metallicolous populations of Hirschfeldia incana. Experimental & Environmental Botany 109:186
Hoang TG, Mai DC, Nguyen TH, Lavarenne J, Gonin M, Nguyen TH, Do NV, Gantet P (2015) Optimization of transformationprotocol for Japonica rice cv. Taichung 65 through Agrobacterium tumefaciens. J. Sci. Dev. 13:764 (in Vietnamese)
Jalloul A, Sayegh M, Champion A, Nicole M (2015) Bacterial blight of cotton. Phytopathologia Mediterranea 54:3-20
Khong NG, Pati PK, Richaud F, Parizot B, Bidzinski P, Mai DC, Bes M, Bourrie I, Meynard D, Beeckman T, Gomez Selvaraj M, Manabu I, Genga AM, Brugidou C, Do NV, Guiderdoni E, Morel JB, Gantet P (2015) OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice. Plant Physiology 169:2935
Laplaze L, Lucas M, Champion A (2015) Rhizobial root hair infection requires auxin signaling. Trends in Plant Sciences 20:332
Larrieu A, Champion A, Legrand J, Lavenus J, Mast D, Brunoud G, Oh J, Guyomarc'h S, Pizot M, Farmer EE, Turnbull C, Vernoux T, Bennett MJ, Laplaze L (2015) A fluorescent hormone biosensor reveals the dynamics of jasmonate signalling in plants. Nature Communication 6:6043
Lavenus J, Goh T, Guyomarc'h S, Hill K, Lucas M, Voss U, Kenobi K, Wilson M, Farcot E, Hagen G, Guilfoyle TJ, Fukaki H, Laplaze L, Bennett MJ (2015) Inference of the Arabidopsis lateral root gene regulatory network reveals a bifurcation mechanism that defines primordia flanking and central zones. The Plant Cell 27:1368
Ngom M, Diagne N, Laplaze L, Champion A, Sy MO (2015) Symbiotic ability of diverse Frankiastrains on Casuarina glaucaplants in hydroponic conditions. Symbiosis 70:79
Nguyen TD, Lacombe S, Bangratz M, Ta HA, Do NV, Gantet P, Brugidou C (2015) p2 of rice grassy stunt virus (RGSV) and p6 and p9 of rice ragged stunt virus (RRSV) isolates from Vietnam exert suppressor activity on the RNA silencing pathway. Virus Genes 51:267
Voß U, Wilson M, Kenobi K, Gould P, Robertson F, Peer WA, Lucas M, Swarup K, Casimiro I, Holman T, Wells D, Peret B, Goh T, Fukaki H, Hodgman C, Laplaze L, Halliday K, Ljung K, Murphy A, Hall A, Webb A, Bennett MJ (2015) Lateral root organ initiation re-phases the circadian clock in Arabidopsis thaliana. Nature Communications 6:7641