DIversité - Adaptation - DEveloppement des plantes


Akakpo R, Scarcelli N, Chair H, Dansi A, Djedatin G, Thuillet AC, Rhone B, Francois O, Alix K, Vigouroux Y (2017) Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. BMC Genomics 18:782

Ambrósio Moreira P, Mariac C, Zekraoui L, Couderc M, Garcia Luize B, Picanço DR, Clement CR, Vigouroux Y (2017) Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin. Evolutionary Applications. In press

Azani N, [...] Duminil J [...] [The Legume Phylogeny Working Group (LPWG)] (2017) A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny. Taxon 66(1):44-77

Barnaud A, Vigouroux Y, Diallo MT, Saidou S, Piquet M, Barry MB, Bakasso Y, Zekraoui L, Rivallan R, Kane NA, Billot C (2017) Strong selfing inferred for fonio (Digitaria exilis) reproductive system: open up opportunity for breeding programs. Plant Genet. Res. Crop. Evol. In press

Burgarella C, Glémin S (2017) Population genetics and genome evolution of selfing species. eLS. In press

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S (2017) Evolutionary forces affecting synonymous variations in plant genomes. Plos Genetics 13(5):e1006799

Cosiaux A, Gardiner LM, Ouattara DN, Stauffer FW, Sonké B, Couvreur TLP (2017) An endangered West African rattan palm: Eremospatha dransfieldii. Biodivers Data J 5:e11176

Diack O, Kane NA , Berthouly-Salazar C, Guèye MC, Diop BM, Fofana A, Sy O, Tall H, Zékraoui L, Piquet M, Couderc M, Vigouroux Y, Diouf D, Barnaud A (2017) New genetic insights into pearl millet diversity as revealed by characterization of early- and late-flowering landraces from Senegal. Front. Plant Sci. 8:818

Donkpegan ASL, Doucet J-L, Duminil J, Daïnou K, Pineiro R, Wieringa J, Champluvier D, Hardy OJ (2017) Evolution in African tropical trees displaying ploidy-habitat association: The genus Afzelia (Leguminosae). Molecular Phylogenetic and Evolution 107:270-281

Eiserhardt WL, Couvreur TLP, Baker WJ (2017) Plant phylogeny as a window on the evolution of hyperdiversity in the tropical rainforest biome. New Phytologist. In press

Fustier MA, Brandenburg J, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI (2017). Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples. Molecular Ecology. In press.

Glato K, Aidam A, Kane NA, Bassirou D, Couderc M, Zekraoui L, Scarcelli N, Barnaud A, Vigouroux Y (2017) Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient. PLoS One 12(5):e0177697

Gros-Balthazard M, Galimberti M, Kousathanas A, Newton C, Ivorra S, Paradis L, Vigouroux Y, Carter R, Tengberg M, Battesti V, Santoni S, Falquet L, Pintaud J-C, Terral J-F, Wegmann D (2017) The discovery of wild date palms in Oman reveals a complex domestication history involving centers in the Middle East and Africa. Current Biology. In press

Jalonen R, Valette M, Boshier D, Duminil J, Thomas E (2017) Forest and landscape restoration severely constrained by a lack of attention to the quantity and quality of tree seed: insights from a global survey. Conservation Letters In press

de Kochko A, Hamon S, Guyot R, Couturon E, Poncet V, Dubreuil Tranchant C, Crouzillat D, Rigoreau M, Hamon P (2017). Omics applications : Coffee. In: Chowdappa P, Karun A, Rajesh MK, Ramesh SV (eds.) Biotechnology of plantation crops. New Delhi: Daya Publishing House, 589-606

Lompo D, Vinceti B, Gaisberger H, Konrad H, Duminil J, Ouedraogo M, Sina S, Geburek T (2017) Genetic conservation in Parkia biglobosa (Fabaceae: Mimosoideae) - what do we know? Silvae Genetica In press

Maggia ME, Vigouroux Y, Renno JF, Duponchelle F, Desmarais E , Nunez J, Garcia-Davila C, Carvajal F, Paradis E, Martin JF, Mariac C (2017) DNA metabarcoding of Amazonian ichthyoplankton swarms. PlosOne 12(1):e0170009

Monthe FS, Duminil J, Tosso F, Migliore J, Hardy OJ (2017) Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae). Applications in Plant Sciences 5(2):1600130

MontheKameni FS, Hardy OJ, Doucet JL, Loo J, Duminil J (2017) Extensive seed and pollen dispersal in the rain forest tree Entandrophragma cylindricum (Meliaceae) inferred from indirect and direct analyses. Molecular Ecology In press

Moussouni S , Pintaud JC, Vigouroux Y, Bouguedoura N (2017) Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity. PLoS ONE 12(4):e0175232

Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis Lardy L, Assigbetse K, Kane N, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L (2017) Pearl millet genetic traits impact rhizobacterial diversity and rhizosphere soil aggregation. Front Plant Sci 8:1288

Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity. in press

Rhoné B, Mariac C, Couderc M, Berthouly-Salazar C, Ousseini IS, Vigouroux Y (2017) No excess of cis-regulatory variation associated with intra-specific selection in wild pearl millet (Cenchrus americanus). Genome Biology Evolution 9(2):388-397

Sanin MJ, Zapata P, Pintaud JC, Galeano G, Bohórquez A, Tohme J, Hansen MM (2017) Up and down the blind alley: population divergence with scant gene flow in an endangered tropical lineage of Andean palms (Ceroxylon quindiuense clade: Ceroxyloideae). J Hered 108(3):288-298

Scarcelli N, Chaïr H, Causse S, Vesta R, Couvreur T, Vigouroux Y (2017) Crop wild relative conservation: wild yams are not that wild. Biological Conservation 210:325-333

Varshney R, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava R, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta S, Wang H, Jiang Y, Couderc M, Katta M, Paudel D, Mungra K, Chen W, Harris-Shultz K, Garg MV, Desai N, Doddamani D, Kane N, Conner J, Ghatak A, Chaturvedi P, Subramaniam S, Yadav O, Berthouly-Salazar C, Falalou H, Wang J, Liang X, Clotault J, Upadhyaya H, Cubry P, Rhoné B, Gueye M, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala R, Singh B, Yadav R, Lyons E, Datta S, Hash C, Devos K, Buckler E, Bennetzen J, Paterson A, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif J, Liu X, Vigouroux Y, Xu X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. In press

Sosef MSM, Dauby G, Blach-Overgaard A, van der Burgt X, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Stévart T, Stoffelen P, Svenning JC, Sepulchre P, Zaiss R, Wieringa JJ, Couvreur TLP (2017) Exploring the floristic diversity of tropical Africa. BMC Biology 15:15

Tournebize R, Manel S, Vigouroux Y, Munoz F, de Kochko A, Poncet V (2017) Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda. PLoS One, 12, e0183412


Addisalem AB, Duminil J, Wouters D, Bongers F, Smulders MJM (2016) Fine-scale spatial genetic structure in the frankincense tree Boswellia papyrifera (Del.) Hochst. and implications for conservation. Tree Genetics & Genomes 12:86

Ambrósio Moreira P, Mariac C, Scarcelli N, Couderc M, Picanço Rodrigues D, Clement CR, Vigouroux Y (2016) Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication. Application in Plant Science. 4(10):1600048

Becerra W, [...] Pintaud JC, [...] (2016) Morichales, cananguchales y otros palmares inundables de Suramérica. Parte II: Colombia, Venezuela, Brasil, Perú, Bolivia, Paraguay, Uruguay y Argentina. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, 573p

Berthouly-Salazar C, Mariac C, Couderc M, Ousseini IS, Santoni S, Tenaillon M, Vigouroux Y (2016) Strategies for detecting climate adaptations in wild pearl millet for future breeding use. In: Enhancing crop genepool use - Capturing wild relative and landrace diversity for crop improvement. Maxted N, Dulloo ME, Ford-Lloyd BV (eds.). Cabi, UK

Berthouly-Salazar C, Mariac C, Couderc M, Pouzadoux J, Floc'h JB, Vigouroux Y (2016) Genotyping-by-sequencing SNP identification for crops without a reference genome: using transcriptome based mapping as an alternative strategy. Frontiers in Plant Science 7:777

Berthouly-Salazar C, Thuillet A-C, Rhoné B, Mariac C, Salia Ousseini I, Couderc M , Tenaillon M, Vigouroux Y (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Molecular Ecology 25(21):5500-5512

Bourobou Bourobou PH, Niangadouma R, Issembe Y, Couvreur TLP (2016)Two new records of palm species for Gabon: Sclerosperma profizianum Valk. & Sunder. and Eremospatha quiquecostulata Becc.. Biodivers Data J 4:e10187

Burgarella C, Chantret N, Gay L, Prosperi JM, Bonhomme M, Tiffin P, Young ND, Ronfort J (2016) Adaptation to climate through flowering phenology: a case study in Medicago truncatula. Molecular Ecology 25(14): 3397-3415

del Castillo AMR, Garcia-Davila C, Mejia K, Pintaud JC (2016) Attalea: Insights into the diversity and phylogeny of an intriguing genus. Palms 60(3):109-124

Cherif E, Zehdi-Azouzi S, Crabos A, Castillo K, Chabrillange N, Pintaud JC, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F (2016) Evolution of sex chromosomes prior to speciation in the dioecious Phoenix species. Journal of Evolutionary Biology 29(8):1513-1522

Couvreur TLP, Niangadouma R (2016) New species of Uvariopsis (Annonaceae) and Laccosperma (Arecaceae/Palmae) from Monts de Cristal, Gabon. PhytoKeys 68:1-8

Dauby G, Zaiss R, Blach-Overgaard A, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Sosef MSM, Stévart T, Stoffelen P, Svenning JC, Sepulchre P, van der Burgt X, Wieringa JJ, Couvreur TLP (2016) RAINBIO: a mega-database of tropical African vascular plants distributions. PhytoKeys 74:1-18

Deblauwe V, Droissart V, Bose R, Sonke B, Blach-Overgaard A, Svenning JC, Wieringa JJ, Ramesh BR, Stevart T, Couvreur TLP (2016) Remotely sensed temperature and precipitation data improve species distribution modelling in the tropics. Global Ecology and Biogeography 25(4):443-454

Dubuisson JY, Hennequin S, Droissart V, Deblauwe V (2016) Hymenophyllum senterreanum Dubuisson & Deblauwe, sp. nov. (Hymenophyllaceae) and its relatives in western Central Africa. Phytotaxa 257(3):287-294

Duminil J, Mendene Abessolo DT, Ndiade Bourobou D, Doucet J-L, Loo J, Hardy OJ (2016) High selfing rate, limited pollen dispersal and inbreeding depression in the emblematic African rain forest tree Baillonella toxisperma - management implications. Forest Ecology & Management 379:20-29

Faye A, Deblauwe V, Mariac C, Richard D, Sonké B, Vigouroux Y, Couvreur TLP (2016) Phylogeography of the genus Podococcus (Palmae/Arecaceae) in Central African rain forests: Climate stability predicts unique genetic diversity. Molecular Phylogenetics and Evolution 105:126-138

Faye A, Pintaud JC, Baker WJ, Vigouroux Y, Sonke B, Couvreur TLP (2016) Phylogeny and diversification history of African rattans (Camamoideae, Ancistrophyllinae). Botanical Journal of the Linnean Society 182(2):256-271

Freitas C, Meerow AW, Pintaud JC, Henderson A, Noblick L, Costa FRC, Barbosa CE, Barrington D (2016) Phylogenetic analysis of Attalea (Arecaceae): insights into the historical biogeography of a recently diversified Neotropical plant group. Botanical Journal of the Linnean Society 182(2):287-302

Gomez C, Despinoy M, Hamon S, Hamon P, Salmon D, Akaffou DS, Legnate H, de Kochko A, Mangeas M, Poncet V (2016) Shift in precipitation regime promotes interspecific hybridization of introduced Coffea species. Ecology and Evolution 6:3240-3255

Goulamoussène Y, Bedeau C, Descroix L, Deblauwe V, Linguet L, Hérault B (2016) Weak Environmental Controls of Tropical Forest Canopy Height in the Guiana Shield. Remote sensing 8(9):747

Gros-Balthazard M, Newton C, Ivorra S, Pierre MH, Pintaud JC, Terral JF (2016) The Domestication Syndrome in Phoenix dactylifera Seeds: Toward the Identification of Wild Date Palm Populations. PLOS ONE 11(3):e0152394

Luebert F, Couvreur TLP, Gottschling M, Hilger H, Miller JS, Weigend M (2016) Historical biogeography of Boraginales: West Gondwanan vicariance followed by long-distance dispersal?. Journal of Biogeography 44(1):158-169

Mariac C, Ousseini IS, Alio AK, Judgé H, Pham JL, Bezançon G, Ronfort J, Descroix L, Vigouroux Y (2016) Spatial and temporal variation in selection of genes associated with pearl millet varietal quantitative traits in situ. Frontiers in Genetics 7:130

Marshall AR, Couvreur TLP, Summers AM, Deere NJ, Luke WRQ, Ndangalasi HJ, Sparrow S, Johnson DM (2016) A new species in the tree genus Polyceratocarpus (Annonaceae) from the Udzungwa Mountains of Tanzania. PhytoKeys 63:63-76

Moraes MR, Pintaud JC (2016) Attalea blepharopus Mart. (Arecaceae) from Bolivia revisited since Martius. Candollea 71:27-32

Ndoye F, Diedhiou AG, Gueye M, Fall D, Barnaud A, Sy MO, Noba K, Diouf D, Kane A (2016) Réponse du fonio blanc (Digitaria exilis Stapf) à l'inoculation avec des champignons mycorhiziens à arbuscules en conditions semi-contrôlées. Journal of Applied Biosciences 103

Ngom A, Mbaye MS, Barnaud A, Kane A, Ba N, Gueye M, Camara AA, Ndour YB, Noba K (2016) Révision du genre Digitaria Haller (Poaceae) au Sénégal : proposition d'une clé de détermination pour une meilleure identification des espèces. International Journal of Biological and Chemical Sciences 10(1)

Passot S, Gnacko F, Moukouanga D, Lukas M, Guyomarc'H S, Moreno Ortega B, Atkinson J, Niang M, Bennett M, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science 7:829

Pham MH, Tran XH, Berthouly-Salazar C, Tixier-Boichard M, Chen CF, Lee YP (2016) Monitoring of genetic diversity in Taiwan conserved chickens assessed by pedigree and molecular data. Livestock Science 184:85-91

Pinel-Galzi A, Dubreuil-Tranchant C, Hébrard E, Mariac C, Ghesquière A, Albar L (2016) Mutations in rice yellow mottle virus polyprotein P2a involved in RYMV2 gene resistance breakdown. Frontiers in Plant Science 7

Pintaud JC, Rodriguez Del Castillo AM, Ferreira EJL, Moraes M R. Mejia K (2016) Towards a revision of Attalea in Western Amazonia. Palms 60(2):57-77

Sanin MJ, Kissling WD, Bacon CD, Borchsenius F, Galeano G, Svenning JC, Olivera J, Ramuirez R, Trénel P, Pintaud JC (2016) The Neogene rise of the tropical Andes facilitated diversification of wax palms (Ceroxylon: Arecaceae) through geographical colonization and climatic niche separation. Botanical Journal of the Linnean Society 182(2):303-317

Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M (2016) A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Molecular Ecology Ressources. doi: 10.1111/1755-0998.12587

Sarrazin F, Pham JL, Reboud X, Lecomte J (2016) Conséquences évolutives des approches par services écosystémiqes. In: Valeurs de la biodiversité et services écosystémiques - Perspectives interdisciplinaires. Riche P, Geijzendorffer, Level H, Maris V (eds.) Edition Quae

Scarcelli N, Mariac C, Couvreur TLP, Faye A, Richard D, Sabot F, Berthouly-Salazar C, Vigouroux Y (2016) Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?. Molecular Eciology Resources 16(2):434-445

Ta KN, Sabot F, Adam H, Vigouroux Y, DeMita S, Ghesquiere A, Vinh DN, Gantet P, Jouannic S (2016) miR2118-triggered phased siRNAs are differentially expressed duringthe panicle development of wild and domesticated African rice species. Rice 9(1):10

Tosso F, Doucet J-L, Kaymak E, Daïnou K, Duminil J, Hardy OJ (2016) Microsatellite development in Guibourtia tessmannii (Harms) J.Leonard and cross-amplification on congeneric species uncover a polyploid complex. Applications in Plant Sciences 4(7):1600029

Zango O, Rey H, Bakasso Y, Lecoustre R, Aberlenc F, Pintaud JC (2016) Local practices and knowledge associated with date palm cultivation in Southeastern Niger. Agricultural Sciences 7(9)

Zehdi-Azouzi S, Cherif E, Guenni K, Ben Abdelkrim A, Bermil A, Rhouma S, Ben Salah M, Santoni S, Pintaud JC, Aberlenc-Bertossi F, Salhi Hannachi A (2016) Endemic insular and coastal Tunisian date palm genetic diversity. Genetica 144(2):181-190


Allie E, Pelissier R, Engel J, Petronelli P, Freycon V, Deblauwe V, Soucemarianadin L, Weigel J, Baraloto C (2015) Pervasive local-scale tree-soil habitat association in a tropical forest community. Plos One 10(11):0141488

Coomes OT, McGuire SJ, Garine E, Caillon S Mckey D, Demeulenaere E, Jarvis D, Aistara G, Barnaud A, Clouvel P, Emperaire L, Louafi S, Martin P, Massol F, Pautasso M, Violon C, Wencélius J (2015) Farmer seed networks make a limited contribution to agriculture? Four common misconceptions. Food Policy 56:41-50

Couvreur TLP (2015) Odd man out: why are there fewer plant species in African rain forests?. Plant Systematics and Evolution 301(5):1299-1313

Couvreur TLP, Niangadouma R, Sonke B, Sauquet H (2015) Sirdavidia, an extraordinary new genus of Annonaceae from Gabon. Phytokeys 46:1-19

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G (2015) The coffee genome hub: a resource for coffee genomes. Nucleic Acid Research 43:D1028-D1035

Haider MS, Khan IA, Jaskani MJ, Naqvi SA, Hameed M, Azam M, Khan AA, Pintaud JC (2015) Assessment of morphological attributes of date palm accessions of diverse agro-ecological origin. Pakistan Journal of Botany 47(3):1143-1151

Ludeña B, Cueva A, Riofrio L, Naranjo C, Bastidas C, Pintaud JC, Suárez JP (2015) Non-coding chloroplast regions analysis within the Orchidaceae family in Southern Ecuador. Revista Bionatura 1(1):69-73

Massoni J, Couvreur TLP, Sauquet, H (2015) Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms). BMC Evolutionary Biology 15:49

Moumouni KH, Kountche BA, Jean M, Hash CT, Vigouroux Y, Haussmann BIG, Belzile F (2015) Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach. Molecular Breeding 35(5).

Mueller L, Strickler S, Domingues D, Pereira L, Andrade A, Marraccini P, Ming R, Wai J, Albert V, Giuliano G, Fiore A, Pietrella M, Aprea G, Descombes P, Moine D, Guyot R, Poncet V, Hamon P, Hamon S, Dubreuil Tranchant C, Couturon E, de Kochko A, Lepelley M, Bellanger L, Merot-l'Anthoene V, Vandecasteele C, Rigoreau M, Crouzillat D, Paschoal Rossi A, Sankoff D, Zheng C, Kuhn G, Korlach J, Chin J (2015) Towards a better understanding of the Coffea arabica genome structure. Proceedings of the 25th international conference on coffee science, ASIC, 2015, p.42-45

Naqvi SA, Khan IA, Pintaud JC, Jaskani MJ, Ali A (2015) Morphological characterization of Pakistan date palm (Phoenix dactylifera L.) genotypes. Pakistan Journal of Agricultural Sciences 52(3):645-650

Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, de Kochko A, Sarramegna-Burtet V, Job D (2015) The Amborella vacuolar processing enzyme family. Frontiers in Plant Science 6:618

Roncal J, Couderc M, Baby P, Kahn F Millan B, Meerow AW, Pintaud JC (2015) Palm diversification in two geologically contrasting regions of western Amazonia. Journal of Biogeography 42(8):1503-1513

Thomas M, Verzelen N, Barbillon P, Coomes OT, Caillon S, McKey D, Elias M, Garine E, Raimond C, Dounias E, Jarvis D, Wencélius J, Leclerc C, Labeyrie V, Cuong PH, Hue NTN, Sthapit B, Bahadur R, Barnaud A, Violon C, Arias Reyes LM, Latournerie Moreno L, de Santis P, Massol F (2015) Chapter Six - A network-based method to detect patterns of local crop biodiversity: validation at the species and infra-species levels. Advances in Ecological Research 53:259-320

Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Naqvi SA, Ludena B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Ben Salah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertoss F (2015) Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. Annals of Botany 116(5):847-847


Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Cherif E, Ballardini M, Abdoulkder S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud JC (2014) In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability. Applications in Plant Sciences 2(1):1300058

Bakasso Y, Zaman-Allah M, Mariac C, Billot C, Vigouroux Y, Zongo JD and Saadou M (2014) Genetic diversity and population structure of a roselle (Hibiscus sabdariffa L.) collection in Niger. Plant Genetic Resources: characterization and utilization 12(2):207-214

Barnaud A, Billot C, Cruz JF (2014) Le fonio, un maillon essentiel de la sécurité alimentaire en Afrique de l'Ouest. Agricultures familiales, Les Dossiers d'Agropolis International 19:1628-4240 

Castano F, Stauffer F, Marquinez X, Crevecoeur M, Collin M, Pintaud JC, Tregear J (2014) Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae; Arecoideae). Annals of Botany 114:1483-1495

Castillo K, Aberlenc-Bertossi F, Dubreuil-Tranchant C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud J-C (2014) In silico mining of microsatellites in coding sequences of date palm (Phoenix dactylifera L., Arecaceae) genome, characterization and transferability. Applications in Plant Sciences 2(1)

Couvreur TLP (2014) Revision of the African genus Uvariastrum (Annonaceae). Phytokeys 33:1-40

Domenech B, Asmussen-Lange CB, Baker WJ, Alapetite E, Pintaud JC, Nadot S (2014) A phylogenetic analysis of palm subtribe Archontophoenicinae (Arecaceae) based on 14 DNA regions. Bot J Linn Soc 175: 469-481

Faye A, Pintaud JC, Baker WJ, Sonke B, Couvreur TLP (2014) A plastid phylogeny of the African rattans (Ancistrophyllinae, Arecaceae). Syst Bot 39:1099-1107

Garine E, Barnaud A, Raimond C (2014) Quel pourrait être le territoire des semences des sorghos que cultivent les Duupa du Massif de Poli (Nord du Cameroun) ?. Les Cahiers d'Outre Mer 265:67-92

Idi Saidou S, Bakasso Y, Inoussa MM, Zaman-Allah M, Atta S, Barnaud A, Billot C, Saadou M (2014) Diversité agro-morphologique des accessions de fonio [Digitaria exilis (Kippist.) Stapf.] au Niger. International Journal of Biological and Chemical Sciences 8(4):1710-1729

Labeyrie V, Deu M, Barnaud A, Calatayud C, Buiron M, Wambugu P, Manel S, Glaszmann JC, Leclerc C (2014) Influence of ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in Eastern Kenya. PLOS One 9(3):e92178

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Leclerc C, Thuillet AC (2014) Biodiversité sauvage et cultivée et gestion des ressources naturelles. Agricultures familiales, Les Dossiers d'Agropolis International 19:35

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Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Maillol V, Santoni S, Vigouroux Y, Couvreur TLP (2014) Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics andphylogeography studies. Mol Ecol Res 14(6):1103-1113

Orjuela J, Sabot F, Cheron S, Vigouroux Y, Adam H, Chrestin H, Sanni K, Lorieux M, Ghesquiere A (2014) An extensive analysis of the African rice genetic diversity through a global genotyping. Theor Appl Genet 127:2211-2223

Ouattara B, Ndir KN, Gueye MC, Diedhiou I, Barnaud A, Fonceka D, Cisse N, Akpo EL, Diouf D (2014) Genetic diversity of Jatropha curcas L. in Senegal compared with exotic accessions based on microsatellite markers. Gen Res Crop Evol 61:1039-1045

Saïdou AA,Clotault J, Couderc M, Mariac C, Devos KM, Thuillet AC, Amoukou IA, Vigouroux Y (2014) Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet. Theo Appl Genet 127(1):19-32

Saïdou AA, Thuillet AC, Couderc M, Mariac C, Vigouroux Y (2014) Association studies including genotype by environment interactions: prospects and limits. BMC Genetics 15(3)

Sow M, Ndjiondjop MN, Sido A, Mariac C Laing M, Bezancon G (2014) Genetic diversity, population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement. Gen Res Crop Evol 61:199-213

Weigend M, Luebert F, Gottschling M, Couvreur TLP Hilger HH, Miller JS (2014) From capsules to nutlets-phylogenetic relationships in the Boraginales. Cladistics 30:508-518


Assoumane A, Zoubeirou AM, Rodier-Goud M, Favreau B, Bezançon G, Verhaegen D (2013) Highlighting the occurrence of tetraploidy in Acacia senegal (L.) Willd. and genetic variation patterns in its natural range revealed by DNA microsatellite markers. Tree Genetics & Genomes 9(1):93-106

Barnaud A, Kalwij J, McGeoch M, van Vuuren BJ (2013) Pattern and pathway of weed invasion: Evidence from the spatial genetic structure of Raphanus raphanistrum. Biological Invasion 15(11):2455-2465

Ballardini M, Mercuri A, Littardi C, Abbas S, Couderc M, Ludeña B, Pintaud J-C (2013) The chloroplast DNA locus psbZ-trnfM as a potential barcoding marker in Phoenix L (Arecaceae). Zookey 365:71-82

Baker WJ, Couvreur TLP (2013) Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. II: Diversification history and origin of regional assemblages. Journal of Biogeography, 40: 286-289

Baker WJ, Couvreur TLP (2013) Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography. Journal of Biogeography, 40: 274-285

Couvreur TLP, Baker WJ (2013) Tropical rain forest evolution: palms as a model group. BMC Biology 11:48

Cherif E, Zehdi S, Castillo K, Chabrillange N, Abdoulkader S, Pintaud J-C, Santoni S, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F (2013) Male-specific DNA markers provide genetic evidence of an XY chromosome system and recombination arrest, and allow to trace paternal lineages in date palm. New Phytologist 197:409-415

De Mita S, Thuillet AC, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y (2013) Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol Ecol. 22:1383-1399

Eiserhardt WL, Svenning J-C, Baker WJ, Couvreur TLP, Balslev H (2013) Dispersal and niche evolution jointly shape the geographic turnover of phylogenetic clades across continents. Scientific Reports 3: 1164

Karsten M, van Vuuren BJ, Barnaud A, Terblanche JS (2013) Population genetics of Ceratitis capitata in South Africa : implications for dispersal and pest management. Plos One, 2013, 8 (1), p. e54281

Kountche BA, Hash CT, Dodo H, Laoualy O, Sanogo MD, Timbeli A, Vigouroux Y, This D, Nijkamp R, Haussmann BIG (2013) Development of a pearl millet Striga-resistant genepool: Response to five cycles of recurrent selection under Striga-infested field conditions in West Africa. Field Crop Res 154:82-90

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Pautasso M, Aistara G, Barnaud A, Caillon S, Clouvel P, Coomes OT, Delêtre M, Demeulenaere E, De Santis P, Döring T, Eloy L, Emperaire L, Garine E, Goldringer I, Jarvis D, Joly HI, Leclerc C, Louafi S, Martin P, Massol F, McGuire S, McKey D, Padoch C, Soler C, Thomas M, Tramontini S (2013) Seed exchange networks for agrobiodiversity conservation: A review. Agron Sustain Dev 33:151-175

Pintaud J-C, Ludeña B, Aberlenc-Bertossi F, Zehdi S, Gros-Balthazard M, Ivorra S, Terral J-F, Newton C, Tengberg M, Abdoulkader S, Daher A, Nabil M, Saro-Hernandez I, Gonzalez-Perez MA, Sosa P, Santoni S, Moussouni S, Si-Dehbi F, Bouguedoura N (2013) Biogeography of the date palm (Phoenix dactylifera L., Arecaceae): insights on the origin and on the structure of modern diversity. Acta Horticulturae 994:19-38

Roncal J, Kahn F, Millán B, Couvreur T, Pintaud J-C (2013) Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae). Botanical Journal of the Linnean Society 171:120-139

Sanín MJ, Anthelme F, Pintaud J-C, Galeano G, Bernal R (2013) Juvenile resilience and adult longevity explain residual populations of the Andean wax palm Ceroxylon quindiuense after deforestation. PLOS ONE

Scarcelli N, Couderc M, Baco MN, Egah J, Vigouroux Y (2013) Clonal diversity and estimation of relative clone age: application to the study of agrobiodiversity of yam (Dioscorea rotundata). BMC Plant Biology 13:178

Zango O, Littardi C, Pintaud J-C, Rey H (2013) Comparative study of architecture and geometry of the date palm male and female inflorescences. Acta Horticulturae 994:175-191


Assoumane A, Mayaki AZ, Favreau B, Bezançon G, Saadou M, Verhaegen D (2012) Differentiation between two sub-species of Acacia senegal complex: Acacia senegal (L.) Willd. and Acacia dudgeoni Craib ex Holland using morphological traits and molecular markers. Genetic Resources and Crop Evolution 59(1):39-48

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Clotault J, Thuillet AC, Buiron M, De Mita S, Couderc M, Haussmann BIG, Mariac C, Vigouroux Y (2012) Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication. Mol Biol Evol 29:1199-1212

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Mariac C, Jehin L, Saïdou AA, Thuillet AC, Couderc M, Sire S, Jugdé H, Adam H, Bezançon G, Pham JL, Vigouroux Y (2011) Genetic basis of pearl millet population adaptation along an environmental gradient investigated by a combination of genome scan and association mapping. Mol Ecol 20:81-91

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Haussmann B, Boubacar A, Boureima SS, Vigouroux Y (2006) Multiplication and preliminary characterization of West and Central African pearl millet landraces. International Sorghum and Millets Newsletter. 47:110-112

Henderson SA, Billotte N, Pintaud JC (2006) Genetic isolation of Cape Verde Island Phoenix atlantica (Arecaceae) revealed by microsatellite markers. Conservation Genetics 7:213-223

Mariac C, Luong V, Kapran I, Mamadou A, Sagnard F, Deu M, Chantereau J, Gérard B, Ndjeunga J, Bezancon G, Pham JL, Vigouroux Y (2006) Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers. Theoretical and Applied Genetics 114:49-58

Mariac C, Robert T, Alline C, Remigereau MS, Luxereau A, Tidjabi M, Seyni O, Bezancon G, Pham JL, Sarr A (2006) Genetic diversity and gene flow among pearl millet crop/weed complex: a case study. Theoretical and Applied Genetics 113:1003-1014

Montufar R, Pintaud JC (2006) Variation in species composition, abundance, and microhabitat preferences among western Amazonian terra firme palm communities. Botanical Journal of the Linnean Society 151:127-140

Pintaud JC (2006) The impact of forest disturbance on the palms of New Caledonia. Palms 50:123-135

Scarcelli N, Tostain S, Mariac C, Agbangla C, Daïnou O, Berthaud J, Pham JL (2006) Genetic nature of spontaneous yams (Dioscorea sp.) domesticated by farmers in Benin (West Africa). Genetic Resources and Crop Evolution 53:121-130

Scarcelli N, Tostain S, Vigouroux Y, Agbangla C, Daïnou O, Pham JL (2006) Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin. Molecular Ecology 15:2421-2431

Tostain S, Scarcelli N, Brottier P, Marchand JL, Pham JL, Noyer JL (2006) Development of DNA microsatellite markers in tropical yam (Dioscorea sp.). Molecular Ecology Notes 6:173-175

Zehdi S, Pintaud JC, Billotte N, Salem A, Sakka H, Rhouma A, Marrakchi M Triffi M (2006) Use of SSR markers to provide an identification key for date-palm varieties (Phoenix dactylifera L.). Plant Genetic Resources Newsletter 145:11-18

Bataillon T, Chantret N, Cenci A, Gautier MF, Joudrier P, Haudry, Muller MH, Poncet C, Prosperi JM, Ronfort J, Roumet P, Santoni S, Thuillet AC, David J (2005) Impacts d'événements démographiques et sélectifs sur la diversité des plantes cultivées : apports de l'analyse du polymorphisme allié à la théorie de la coalescence. Les Actes du BRG 6, 243-257

Bezancon G, Diallo S (2005) Oryza glaberrima. In: Plant Resources of Tropical Africa (PROTA book on cereals and pulses) Databank. Wageningen UR, Netherland

Bellon MR, Berthaud J (2005) Maize diversity, gene flow and transgenes in Mexico. In M CARMEN DE VICENTE (ed); Topical Reviews in Agricultural Biodiversity: Issues on Gene Flow and Germplasm Management. Rome: IPGRI, pp. 45-51

Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, Buckler ES (2005) Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant Journal 44:1054-1064

Fukunaga K, Hill J, Vigouroux Y, Matsuoka Y, Sanchez J, Liu KJ, Buckler ES, Doebley J (2005) Genetic diversity and population structure of teosinte. Genetics 169:2241-2254

Ludeña B, Escobar JC, Pintaud JC (2005) Elementos Alu en el análisis filogenético molecular del infraorden Platyrrhini, Primates. Revista Ecuatoriana de Medicina y Ciencias Biológicas 27:47-51

Ouennoughi M, Kahn F (2005) Behind the date palm in New Caledonia. Palms 49(2): 67-72

Pintaud JC (2005) La Garance Voyageuse 69: 21-26

Pintaud JC (2005) Rhopalostylis baueri on Norfolk Island. Palms 49:92-96

Pintaud JC (2005) A journey along the Rio Napo. Palms 49:85-91

Scarcelli N, Daïnou O, Agbangla C, Tostain S, Pham JL (2005) Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n = 40). Theoretical and Applied Genetics 111:226-232

Second G, Glaszmann JC, Panaud O(2005) Unravelling the origins and genetic diversity of cultivated rice. In: France and the CGIAR: delivering scientific results for agricultural development, pp 11-14

Serratos-Hernandez JA, Islas-Gutierrez F, Buendia-Rodriguez E, Berthaud J (2005) Gene flow scenarios withtransgenic maize in Mexico. Environmental Biosafety Research, 3:149-157

Thuillet AC, Bataillon T, Poirier S, Santoni S, David JL (2005) Estimation of long-term effective population sizes through the history of durum wheat using microsatellite data. Genetics 169:1589-1599

Vigouroux Y, Mitchell S, Matsuoka Y, Hamblin M, Kresovich S, Smith S, Jaqueth J, Smith O, Doebley J (2005) An analysis of genetic diversity across the maize genome using microsatellites. Genetics 169:1617-1630

Wang H, Nussbaum-Wagler T, Li B, Zhao Q, Vigouroux Y, Faller M, Bomblies K, Lukens L, Doebley JF (2005) The origin of the naked grains of maize. Nature 436:714-719

Whittier D, Pintaud JC, Braggins J (2005) The gametophyte of Lycopodium deuterodensum: type I or type II. American Fern Journal 95:22-29

Billotte N, Couvreur T, Marseillac N, Brottier P, Perthuis B, Vallejo M, Noyer JL, Jacquemoud-Collet JP, Risterucci AM, Pintaud JC (2004) A new set of microsatellite markers for the peach palm (Bactris gasipaes Kunth); characterization and across-taxa utility within the tribe Cocoeae. Mol Ecol Notes 4:580-582

Billotte N, Marseillac N, Brottier P, Noyer JL, Jacquemoud-Collet JP, Moreau C, Couvreur T, Chevallier MH, Pintaud JC, Risterucci AM (2004) Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.): characterization and utility across the genus Phoenix and in other palm genera. Mol Ecol Notes 4:256-258

Bellon MR, Berthaud J (2004) Transgenic maize and the evolution of landrace diversity in Mexico. The importance of farmers' behavior. Plant Physiol 134:883-888

Pressoir G, Berthaud J (2004) Population structure and strong divergent selection shape phenotypic diversification in maize landraces. Heredity 92:95-101

Pressoir G, Berthaud J (2004) Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico. Heredity 92:88-94

Serratos-Hernández JA, Islas-Gutiérrez F, Buendía-Rodríguez E, Berthaud J (2004) Gene flow scenarios with transgenic maize in Mexico. Environ Biosafety Res 3:149-157

Thuillet AC, Bataillon T, Sourdille P, David JL (2004) Factors affecting polymorphism at microsatellite loci in bread wheat [ Triticum aestivum (L.) Thell]: effects of mutation processes and physical distance from the centromere. Theor Appl Genet. 108:368-377

Zehdi S, Trifi M, Billotte N, Marrakchi M, Pintaud JC (2004) Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymprohism. Hereditas 141:278-387

Kahn F, Gluchy D (2002) Variation in morphology of the pistillate flowers of Astrocaryum urostachys (Palmae) in Amazonian Ecuador. Nordic J of Bot 22:353-360

Vigouroux Y, Matsuoka Y, Doebley J (2003) Directional evolution for microsatellite size in maize. Mol Biol Evol 20:1480-1483

Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez G J, Buckler E, Doebley J (2002) A single domestication for maize shown by multilocus microsatellite genotyping. PNAS 99:6080-6084

Thuillet AC, Bru D, David J, Roumet P, Santoni S, Sourdille P, Bataillon T (2002) Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp durum desf. Mol Biol Evol 19:122-125

Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WD, Smith JS, Doebley J (2002) Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol 19:1251-1260

Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, Doebley J (2002) Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. PNAS 99:9650-9655

Renno JF, Mariac C, Poteaux C, Bezançon G, Lumaret R (2001) Haplotype variation of cpDNA in the agamic grass complex Pennisetum section Brevivalvula (Poaceae). Heredity 86:537-544

Chapin MH, Essig FB, Pintaud JC (2001) The morphology and histology of the fruits of Pelagodoxa (Arecaceae): Taxonomic and biogeographical implications. Systematic Bot 26:779-785

Pintaud JC, Jaffré T, Puig H (2001) Chorology of New Caledonian palms and possible evidence of Pleistocene rain forest refugia. C R Acad Sci III 324:453-463

Vigouroux Y, Couvet D (2000) The hierarchical island model revisited. Genet Sel Evol 32:395-402

Mariac C, Trouslot P, Poteaux C, Bezançon G, Renno JF (2000) Chloroplast DNA extraction from herbaceous and woody plants for direct restriction fragment length polymorphism analysis. Biotechniques 28:110-113

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